BAC Information

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BAC

Clone NameMSMg01-207D15
Chromosome15 (Build37)
Map Location 90,278,425 - 90,278,739
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
Downstream geneCpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207D15.T7 (MSMg01no207_d15.b1)MSMg01-207D15.TJ (MSMg01no207_d15.g1)
ACCAG390536AG390537
length1,2251,226
length of high quality
(start - end)
319 (504 - 822)385 (74 - 458)
definitionCHROMAT_FILE: MSMg01no207_d15.b1 PHD_FILE: MSMg01no207_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:54 2005CHROMAT_FILE: MSMg01no207_d15.g1 PHD_FILE: MSMg01no207_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTGTTTNNNNNGAACATTGGCGCTAAGACTCACTAAGGGAGAGGATCCGC
GGAATTCTCTTCCTTCATACCCCTCCCCACACAACACTGTATTACTCATA
AAGCCTGGATTCTGTTTGTACACATGATTTATACCGAATTATATTCTCCT
AGGTATATTGCCTCTGGTGACATTATTAAAACTTTATGACTTTCATATAA
AGGGAGAATCAACAAGACTATGAACTTTGCAATGGTAATTATCAATTTAT
TTTGAAACATGATATATAATGTTTTTCTTTATTACAATTTTTCTCTTGGG
TATTTGTTGAAAAGAAAACATTTGGTGTGAATACTACATTTCAATGGAAA
GGCAGCAATTACTTCAATTAGATATCACATATTTTAAAGTCATGTTTTAT
TGATATTTCAAGCCTTGGGTTGATATCAGAGGACATAGAATTTGCCCTCT
GACACCTTTTTTTGTCTCCCCGCTGTATTATGCCTATCGACTTTAAAAAA
GATCCAGCACAGCTTAATAGTTCTCACCCTCCCAAGATTCATGGCTTCAA
AATTCATCCAGAGACTAGTACATTTGCATGTCGAAAGTCACTTCTCATAG
TGTTTATAAAATACAACATATTCAGGCTTAGGCATTGCATAATACAGCAG
TGGCTTTTAAATTAAAAATGAATGGCTTAAAGTTAATTATTTTACAATTG
ATGCTCTTGTCATTATTATAGCCCTTATAATTTCTAGTTGCATTATGCTG
TATATTATGTATTATATACCATTATATTATATAAATATTACATATAATAT
AATATATATTGGCATGTTTTTCAGCCATAGGAAAAGTTTTGTCTTTTGCA
GAAAAGGATGGATGTAAAAGGAGGCAATCAAGACAAACACTGTATGTTCC
TTCATCCGTATTTATGAGTTTTATATATTCACAAAAGTTATGAATGTATT
ATTAGGAAGAGAAGTGTGATTATCCCCAGGGAAGTTTAAAAGGATGAAAG
GAGGGGTTAATGAAAAATTGCCTAAGGTGGTTAAAATTTCTTACCAAAAA
AAACCCTTCCATTTTTTAATAAATTTTTAAAAAAAAAAAATTTTTATGGG
AAAAAAAAATTTTTTAAAAAAGGAAACTCTGTTTTTGTAAAACTAAATAA
AAAGTTTAAATCCCCTCCCTCGTTTTAAAAAGGTTGTACCTCGCTCCCCC
CGTCTGAGTTTATAAAATATAATAT
NTTTTGGAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCACACTGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGATTTTATACGCCCCTCAACAGAGGAATGGATACAGAAAATGA
GGGACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTA
AACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCC
CTCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACGGA
GTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAG
GGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTA
GCAAGATTTTATTGAAAGGACGCAGATGTAGCTGTCTCTTGTGAGACTAT
GCCGGGGCCCAGCAAACACAGAAGTGGAGGCTCACAGTCAGCTAATGGAT
GGATCATAAGGCTCCCAAGGGAGGAGCTAGAGAAAGTAATCCAATGAGCT
AAAGGGATCTGCCACCCCTAAAAGGGGGAAACACCTTTATGAGCTTAACC
CGTTCCCCCGGAGACTCTTTGAATTCCAGCGGCTAAAAATATACAAAAGA
ATGGCCTAATACCGGCCCTCCCCGGGAAAAGAAAAGGCCCCTTTGGANTT
GTCTAAAATTTTTTATGCTCCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_d15.b1 MSMg01no207_d15.b1 CHROMAT_FILE:
MSMg01no207_d15.b1 PHD_FILE: MSMg01no207_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:54 2005
         (319 letters)



>mm_chr15_90278296_90279014
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   cacagcttaatagttctcaccctcccaagattcatggcttcaaaattcatccagagacta 64
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 cacagcttaatatttctcaccctcccaagattcatggcttcaaaattcatccagagacca 385

                                                                       
Query: 65  gtacatttgcatgtcgaaagtcacttctcatagtgtttataaaatacaacatattcaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtacatttgcatgtcgaaagtcacttctcatagtgtttataaaatacaacatattcaggc 325

                                                                       
Query: 125 ttaggcattgcataatacagcagtggcttttaaattaaaaatgaatggcttaaagttaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaggcattgcataatacagcagtggcttttaaattaaaaatgaatggcttaaagttaat 265

                                                                       
Query: 185 tattttacaattgatgctcttgtcattattatagcccttataatttctagttgcattatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattttacaattgatgctcttgtcattattatagcccttataatttctagttgcattatg 205

                                                                       
Query: 245 ctgtatattatgtattatataccattatattatataaatattacatataatataatatat 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttgtatattatgtattatataccattatattatataaatattacatataatataatatat 145

                          
Query: 305 attggcatgtttttc 319
           |||||||||||||||
Sbjct: 144 attggcatgtttttc 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)