BAC Information

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BAC

Clone NameMSMg01-207L12
Chromosome15 (Build37)
Map Location 33,287,794 - 33,288,182
singlet/doubletsinglet
Overlap genePgcp
Upstream geneSema5a, LOC100040962, Sdc2
Downstream gene1700084J12Rik, Tspyl5, LOC675463, Mtdh, Laptm4b, Matn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207L12.T7 (MSMg01no207_l12.b1)MSMg01-207L12.TJ (MSMg01no207_l12.g1)
ACCAG390852AG390853
length1,2301,192
length of high quality
(start - end)
703 (84 - 786)383 (72 - 454)
definitionCHROMAT_FILE: MSMg01no207_l12.b1 PHD_FILE: MSMg01no207_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:00 2005CHROMAT_FILE: MSMg01no207_l12.g1 PHD_FILE: MSMg01no207_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGTTTTTNNNNNNNGCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTTTTCTTACATCGAGCCATTATGAATACCCAAAGCATGTCT
GAGAAGTCATGGTACTTGTTGGAACATGGTAATGACACGAGAGAAATACC
TCCTAGGGAAGATCAACAAAAGCTCCAGAAGACATGGCATCATAGTCCCC
AATGACCACAGGGGCAGGGAAACTAGCACAGTTACTCTGTCCTTTTGACA
GCATGGTGTCAGGCCCCAAATGTTCAGTGCCATTGAGTCTGGACATTAGA
ATCACATTTGCCTAGAACTCAATGACGATAATGCTAGGCCGACTGGATAG
AGCAAGGATAGTGAACAGAACCTCCTTATCCCAGGCCAAGCCTCCTCTCA
CCTAGCTCACTTTGCCTTAAAAAACAAGGTCTATCTAACCTAGACTGGCT
TTCCTCTGAAACTATTTTTTCTTTTTTTTTCTTCTTTTTTTTTTCCTTTT
CCATTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAA
AGTCTCCCATACCCACACACCCCCACTCCCCTACCCACCCACTCCCCCTT
TTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCA
ATGGGCCTCTCTTTCCAGTGATAGCCGACTAGGCCATCTTTTGATACATA
TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTT
CCACCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGC
TCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGATTGTGAGCATCC
ACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACGGCTAAAT
CTCGGGTCCTTTCGATAAAATCTTGCTAGCGTATGCCATGGTGCCAGCGT
TTGGTAACTGATGGTGAAAGGGGGAATTTACTTTCCCCCCCTTATTGGGC
TCTAATATGGACTGGATAATGGCCCCCCTCCTAAATATTTTTTATTCCCC
TTTTGTAAGCCCTCTTTCTTGCCGGAAATCCCTTCTTTAAATCCAATGGC
CTGTTGTCGCTAAGCATAACCTTTTTTCTCTCTTTTTTTTCCAATGATAT
CCTCGTGTAAAATTAACGTTTTCTTTTTTTTCTTTAAAAAATACTTATTT
TTGTCTCTATTTGGCTTTCTCATTATCTAA
NNNCCATGATGTGAGNCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAATCTCCCACTATTATCCTGTGAACATC
AATGTGTGATTTAACCTTTAGTAGTGCCCCTTTTACAAATGTAAAATGTG
TTTGAGGCATAGATGTTAAGAATTGAGACATCATCTTAGTAGAGATTTTC
CTTTGCTGAGTATGAAATGTCTTCCCTCATCTTTTTTTTTTCTTTTCATT
AATTTTAGTTTGAAGTCTATTTTGTTCGGTATTAGAATGGTCTCACCACC
TTGCTAGGTCTATTTGCTTGGAAAATCCTTTTTGATCCACTTTTTTCTGT
GGCAATGTCTATGTTTGATATTGAAGTGTGTTTCTTGTATGCAAGAGAAG
GATGAATTCTTTTTTCCCCATCCATGCTAAATCTGTATCTTTTTATTGGG
TTTTTTAGTCCCCCCATAATGAAAGATATCAGTGACAAATTCATGGTTTT
CAGGTTTGTTGGTTGTGGTGGTGGTGNTGATGNNNNNTTTTTTTTTTTTC
TTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTCTTTTTT
CTCTTTCTTCTTCTTCTTTTTTTTTTTTTCTCTCTTTCCTTCTTTTTTAT
TCTTTTTTTTTCTTCTTCTTTTTTTTCTCTTTTCCTTTTCTCTTTTTTTC
TTCTATTCTCTCATTCTTTTTTCTTTTACATTCCTTTTTCTCTTTTTACT
TCCTCCTTTTTTTTTTTTTTTTTTACTCTCTTTTTTTTATTCTTTACTTT
CTTTCTTTTTCATCTTTTCTTCTTTTTCTCTNTTTTTTATTTTTTCTTTT
CTTTCATTTCTTTCTTATTTATTTTCCTTCTCTTCTTTTTCTCTTCTCTC
TTTTTTTTTCTTCTTTCTTCTTTTTCTTTTCTTTTTCTTACTTCTATCTC
TTTTATCTTTCTTTCTCTCTTTTTCTTCTCATTTTCTCCTTCTCCTTTTT
CTTCTCTTTTTAATTCTTTCATCTCTTTTCTTTCTTTCTTTTTCTCTTTC
CTATCTCTTTCTTTCTATTTACTTATTTATTTCTTTTTTCCTTAACTTCT
CAATCTTTTTCACCTTCTTTATTTTACTCTACATCTTCCTCTTCACTTTT
CCTTCCTTTATTACCTTTACNTACCTTCATTTTTATCATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_l12.b1 MSMg01no207_l12.b1 CHROMAT_FILE:
MSMg01no207_l12.b1 PHD_FILE: MSMg01no207_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:00 2005
         (703 letters)



>mm_chr15_33287603_33288705
          Length = 1103

 Score =  706 bits (365), Expect = 0.0
 Identities = 383/389 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacccaaagcatgtctgagaagtcatggtacttgttggaacatggtaatgacacgagag 60
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 580 atacccaaagcatgtctgagaagtcatggtacttggtggaacatggtaatgagacgagag 521

                                                                       
Query: 61  aaatacctcctagggaagatcaacaaaagctccagaagacatggcatcatagtccccaat 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaatacctcccagggaagatcaacaaaagctccagaagacatggcatcatagtccccaat 461

                                                                       
Query: 121 gaccacaggggcagggaaactagcacagttactctgtccttttgacagcatggtgtcagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 460 gaccacaggggcagggaaactagcacagttactctgtccttttgacagcacggtgtcagg 401

                                                                       
Query: 181 ccccaaatgttcagtgccattgagtctggacattagaatcacatttgcctagaactcaat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 400 ccccaaatgttcagtgccattgagtctggacattagaatcacatttgcctagaactcatt 341

                                                                       
Query: 241 gacgataatgctaggccgactggatagagcaaggatagtgaacagaacctccttatccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gacgataatgctaggccgactggatagagcaaggatagtgaacagaacctccttatccca 281

                                                                       
Query: 301 ggccaagcctcctctcacctagctcactttgccttaaaaaacaaggtctatctaacctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggccaagcctcctctcacctagctcactttgccttaaaaaacaaggtctatctaacctag 221

                                        
Query: 361 actggctttcctctgaaactattttttct 389
           |||||||||||||||||||| ||||||||
Sbjct: 220 actggctttcctctgaaacttttttttct 192


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)