BAC Information

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BAC

Clone NameMSMg01-207O18
Chromosome15 (Build37)
Map Location 95,053,256 - 95,053,666
singlet/doubletsinglet
Overlap geneNell2
Upstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117, LOC100043315
Downstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207O18.T7 (MSMg01no207_o18.b1)MSMg01-207O18.TJ (MSMg01no207_o18.g1)
ACCAG390983AG390984
length1,1961,558
length of high quality
(start - end)		419 (35 - 453)---
definitionCHROMAT_FILE: MSMg01no207_o18.b1 PHD_FILE: MSMg01no207_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:28 2005CHROMAT_FILE: MSMg01no207_o18.g1 PHD_FILE: MSMg01no207_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGCTCATTGGNCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
CTTCACTTCAGACTTCGCTCCTTTCATTCCTGAATTTCCACAAAATTGTG
GTGATCCCACCTACCTCTTTCTCCTAAGCGCTGAGACTAAAGGTGTGCAC
CACCATGCAGGGCTTCTCTGTTGATTCTGGTCACCGTTTAAAGCACGTCT
TTGAAGGTGTCTGTGGTATGTTTAGTCTTCATCTGAGACTTACTTCCGAG
TCATTGTCCACCTACTTTTCTCTTCACTAGGACAGACCTGTTCTCTCATG
TTATCGTCTGTTAGTGTTACAATGTATAGGATTTTATGTGGATTATGTTG
CATTGCTGTCAAGTCTATTGGAATCCTCTGATCTTTTGTTCTAGCAGGCA
GTCAGATAATGGCCAATCACCTCACACGTGTGGGAGCTTTGCTCTTTGCC
TGTTATTTGGCCCCCCCCTGATATTATTTTAGATTGAAAAAAAATAAGGT
AAGGTTGANATAGTATTTTATNNATTTTTATTTATTCTTTGATGTTTTGG
TTGTAAGTTTTGAGTTTTTTATTTTTTGTTTATATATATTTTAATTTTTT
TTTTTATGTTTTTTTTTATTTTATATGAATTTTTTTTTTTTTATTTTTTT
TTTTATATTTTTTTTTTATTTTTATAATATTTTTTTTATTTTTTTATTAT
TTATTATTTATTTTTTTTTTTTTTTTATGTTTTAATTTATATTTTGATTT
TATATATATTTTTTTTATTTTTATTTTTTTTTGTATTTTTTTATTTTATT
TTATTTATATTTTTTTTTTTTATATTATATTTTTTTAATTTTATATTGTT
TTTTTTTTTTTATTTANTTTTTATTTTTTTTTGTATTTTTTATTTTTATT
TTTTTTTTTTTTTTTTATATATTTTTTATTTTATTATTTTTTTATATTTA
TTTTATTTTTTTTTTATTTTTTATTTTTTTTATTATTTTTTTTTATTTTT
TATTTTTAATTTAATTTTTTTTATATTATTTTTTTTTTTTATATATTTTT
TTTTTTTTATTTTTATTTTATTTTATANATTATTTATATTTTTTTTATAT
TTNTTTTTTTTATTTTTATATTTTTTTTTTTTTTTATTAATATGTTATTA
TTTTANATATTATTTTTTTGTATTTTTTATTTTATTTTTTTTTTTT

TCTTTATAAAAAAGGGGCGNNNNTATNGNNNANNGNCNGGNNGNNGGGGG
AACGCCCTATAAAAAAAGTCTCNTTNACACCCCCCATATATATATATTTA
GGTATGAAAATAAAAAAAAAAAGTAGTATATAAGGAAAANAAGAGAATTC
CCTAAAAAAAGAATCCTCTTTCTCTTTNTAGTTAAATAGAAAAGTAAATA
AGAAAGTACTAATAAATTAATATTGAAGTATTAATATATTATATGACTCA
AATAAATTGGTATAAATATAAAATATTACAAAGATGTAAATTATGAAAAA
ATAATTAAATTATAAGATACTTATATAATGTATGTACATTATATTATAAA
ATAATATATATATATTTCTCTGTAAATAATTATTAATATAAGTAATGCTT
AAGAAAAATATCATAGAGATATAACATATTTTTTTTTTTTATTATANATG
AGAATAAGTAAATTAATAGGTGATTTTAAAAAGAATAAATAATAAAAGAT
TTTTTTTTTTTTTTCCCCCCCCCCCAGAATTAATATTTTTTTCTCTTAAA
AAAAAAAAAAAGAGAAGGGGTGTGTTTTTTTTTTTCTTTTTTAATTTATA
TAAATAATATACTTAAAAATAAAAAATGATTAATTTATTATATATAAAAT
ATAAAAATATAAATATAATTAAAATAAATGTATAATAATGTAATAATGAA
ATACATAATATATATATTATATTAATAATATTTTTTTANTATATTAAAGA
TAATTAATTTTATAAATATTTATATAAAAATTATATAAATATTTTAATAA
ATAAAGTAATATATATATGTAAAGAGTAATACTGTATATTATTATATATA
ATTATATATATAAATAAAATTTAACTAAATTATAATAAATATAAATATTC
ATAATAAATATGATGTAGTATAATTATAAATATAATGTATATATATATAA
AAATTATATAATATATATAGTTATATAAAATGATAAATAATTAAAAATAA
TAAGTTTAATTTATAATAATTAATAAATAATTAATATATTAATATTAGAT
ATATTAATAAATAATCTAATTATTTATATAAATATAAATTATGATATATA
AGAATATGGATAATAAATATAAACTAATATAAATAATTAAATATTAATTA
GATAAAAAGTAATAACATATAAATAAATATAATAAAATTAATAAATAATA
TTATATATATAAAAAAATCATATAATATATAAGTAATAGATATAATATAT
ATATTATTGATGAATAATATTAATTTATAATTACTGAGNAATATAATAAT
AATTATAACTTAGAGATATGTTTGTAATATAAATTAATAACATGTTATAG
ATATATATTTAATATAAATATGTAGAATAGTAATAGTATATGTGCGATGA
ATGTTAAATTATAAATAAATGTATAATATCTATATTATTATAAAATAAAA
TTTATATAGATATTATACTCACATAATGAAAGATAATAANTATATATATT
TATATTATATATATAATAATAACTAATTTAATCTATATACTAANATGATA
ATATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_o18.b1 MSMg01no207_o18.b1 CHROMAT_FILE:
MSMg01no207_o18.b1 PHD_FILE: MSMg01no207_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:28 2005
         (419 letters)



>mm_chr15_95053045_95053866
          Length = 822

 Score =  710 bits (367), Expect = 0.0
 Identities = 399/411 (97%), Gaps = 3/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcttcacttcagacttcgctcctttcattcctgaatttccacaaaattgtggtgat 71
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattcttcacttcagacttcgctcttttcattcctgaatttccacaaaattgtggtgat 563

                                                                       
Query: 72  cccacctacctctttctcctaagcgctgagactaaaggtgtgcaccaccatgcagggctt 131
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccacctacctctttctcctaagtgctgagactaaaggtgtgcaccaccatgcagggctt 503

                                                                       
Query: 132 ctctgttgattctggtcaccgtttaaagcacgtctttgaaggtgtctgtggtatgtttag 191
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctctgttgattccggtcaccttttaaagcacgtctttgaaggtgtctgtggtatgtttag 443

                                                                       
Query: 192 tcttcatctgagacttacttccgagtcattgtccacctacttttctcttcactaggacag 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcttcatctgagacttacttccgagtcattgtccacctacttttctcttcactaggacag 383

                                                                       
Query: 252 acctgttctctcatgttatcgtctgttagtgttacaatgtataggattttatgtggatta 311
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 382 acctgttctctcatgttatcgtctgttagtgttacaatatataggatttaatgtggatta 323

                                                                       
Query: 312 tgttgcattgctgtcaagtctattggaatcctct---gatcttttgttctagcaggcagt 368
           ||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||
Sbjct: 322 tgttgcattgctgtcaagtctattggaatcctctgaagatcctttgttctagcaggcagt 263

                                                              
Query: 369 cagataatggccaatcacctcacacgtgtgggagctttgctctttgcctgt 419
           ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 caggtaatggccaatcacctcacacgtgtgggagctttgctcttcgcctgt 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 822
Length adjustment: 9
Effective length of query: 410
Effective length of database: 813
Effective search space:   333330
Effective search space used:   333330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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