BAC Information

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BAC

Clone NameMSMg01-208M20
Chromosome15 (Build37)
Map Location 52,836,944 - 52,837,224
singlet/doubletsinglet
Overlap genenone
Upstream geneAard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745
Downstream geneExt1, Samd12, EG665097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208M20.T7 (MSMg01no208_m20.b1)MSMg01-208M20.TJ (MSMg01no208_m20.g1)
ACCAG391564AG391565
length718774
length of high quality
(start - end)
312 (45 - 356)285 (128 - 412)
definitionCHROMAT_FILE: MSMg01no208_m20.b1 PHD_FILE: MSMg01no208_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:44 2005CHROMAT_FILE: MSMg01no208_m20.g1 PHD_FILE: MSMg01no208_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCGACCATAGAATCTAAAAGAGAAAAAGATTCATGGGCTGAGCGT
GCTTAAAAGTTGCAATGGAAAATATTTCTTTCAGTTACCTTTCTATGAAG
AGACACCATAAGGACTTGCATACAGTTTTATAGGGTGAACTCATGACCAT
CGTGGCATTGAGTATGGCAGCAGGCAGACAAAGATTGCACAGTAGCTGAG
AGCTTGCATCTGATCCACAAGGAGCAATTAGGGGATGGTGGAATGAAAGT
GGGCCTGTTGTGAGATATTTGACATTCAAGCCTACCCCTTGTGACATACA
TCCTGTTTATANGTTACACCCCCCAAACCTCCCCAAATCAGTTCTACCAA
CTACGGNGTTTTCCCCCACCCACAAAAAAAAATGGAGGAGCATTCTCATT
TAAACCACACAATATTGTTGTAAGTTATGTGTATATATAGATATAGATTC
TCGCCAGATGCATTTATTTTTGCGTACATCTTCTCCCCCACAACCCTGTG
CCAACTGTATTCATCTCCAATGTACATTATACGCGCCTCTTAAAATATAT
GTCTTATTATCGTTCCTTACCCCCCAAAAAACTTTTTTCTTTCCCTTCCT
TCTCTCTTCCCCCCCCCCCTTCTACACTTTACCCCCCCCCTATATAGTAT
TCCTTTTTTCTTTGTCCG
TTTTTTTTTANNNNNTTTTTTTTCANNNNNNNNNNNNNNNNNNNNNNNTT
CTCTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGCATTGCAGTTTATTAGCT
GAGAACAATAAAGTGATGTTCTGGGAATGAATGTAAATCAGGAGGAGCTG
GCAAAGATTGAGAATGGTAGCTCTGACAACTTCAATTAGTCCTTGAAGGT
CAGTTGGTAAATGATGGAAACAGAGAATAATTAACACTTCCCTGGCAAAT
CGCTGCAGAAATTGACTTAATCTTTATTTCTTCATCATTTTACTTATTGG
CTTCAGCCTCATAATCCCCCTGAGTCCTAGAATTACAAGTGTACACTGCC
ATATTCCGTTCTTCNTTCTCCCANGCAACCACGGAGAAAATATCTTCCTA
AGTAATACATCTAGGCCCCGCAAAGAAAAAAAAAACTTCTCTTGTAAAGG
CTACTGGTTTTCATGTCTGGAGAGTGTAACTGCCTGCAAGGTGATAGAAA
ACCAGAAGACTTTACCTGTTGTACATAAGTCTTGGGAGTTATGTGTGTAC
AAGAAAACAAAATCATTTTCTCTCTGTGATAGCATTAGATGGTGGAAATT
ATTCATATTAGGTTAGGCAGGGTTTATTAGCAGATAAAAGGCGATTGAAA
AAATGTACATGTATACCTAACATATTAATATATCTTACAGAAATTTATTA
AATAGGATTACATGATAAGAGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_m20.g1 MSMg01no208_m20.g1 CHROMAT_FILE:
MSMg01no208_m20.g1 PHD_FILE: MSMg01no208_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:44 2005
         (285 letters)



>mm_chr15_52836744_52837428
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagcattgcagtttattagctgagaacaataaagtgatgttctgggaatgaatgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagcattgcagtttattagctgagaacaataaagtgatgttctgggaatgaatgtaaa 260

                                                                       
Query: 61  tcaggaggagctggcaaagattgagaatggtagctctgacaacttcaattagtccttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggaggagctggcaaagattgagaatggtagctctgacaacttcaattagtccttgaa 320

                                                                       
Query: 121 ggtcagttggtaaatgatggaaacagagaataattaacacttccctggcaaatcgctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcagttggtaaatgatggaaacagagaataattaacacttccctggcaaatcgctgca 380

                                                                       
Query: 181 gaaattgacttaatctttatttcttcatcattttacttattggcttcagcctcataatcc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gaaattgacttaatctttatttcttcatcattttacttattgacttcagcctcataatcc 440

                                                    
Query: 241 ccctgagtcctagaattacaagtgtacactgccatattccg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgagtcctagaattacaagtgtacactgccatattccg 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)