BAC Information

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BAC

Clone NameMSMg01-209A20
Chromosome15 (Build37)
Map Location 55,549,405 - 55,549,689
singlet/doubletsinglet
Overlap geneSntb1
Upstream geneNov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13, Mtbp
Downstream geneLOC665348, LOC100039908, Hba-ps3, Has2, EG594843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209A20.T7 (MSMg01no209_a20.b1)MSMg01-209A20.TJ (MSMg01no209_a20.g1)
ACCAG391731AG391732
length727730
length of high quality
(start - end)
325 (45 - 369)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no209_a20.b1 PHD_FILE: MSMg01no209_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:03 2005CHROMAT_FILE: MSMg01no209_a20.g1 PHD_FILE: MSMg01no209_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGAGTTAGATTTAAAAACAAAACAAAACAAAACAAATAACCCAA
TTTAAAAAATGGGGTATAGAGCTAAACAGAGAATTCTTAACAGAGGCATC
TTGGATGGCCAAGAAGCTTTTGGGGAACCACTAGGAAGTTCCAAAATACC
AGGGAAGCAAGAGGTTCCCATGAACCAATGGGGATGACATTATCTGAAAT
ACCCAACAGCAGGGAGATAGAACCTGTAGAGACCACCTGCAGTAAACAGA
CATGGGTCCCATTGAGGGGATGGGGCCACCCACCCATCTCAAAACTTTTA
ACCCACAATTGTCCCTGTCTACACGGAAATGCAGGGATAAAAATGGAGCA
GAGACTGAAGGAAAGGCTGTCCAGAGACTGCCCCACCTTGTGATCTATTC
CATCCGCAGACACCTACCCCCAACACTGTATTGCTGATGCCAAGATGTGT
TTGCGGATAGGAACCTGGTATGGCTGTCCTCTGAGAGGGTTTGCCAGCAG
CTAAGACAGATTCAGATACTCACAGCCAACCATTGGACTGAACTGGGGTG
TGGGACAGTGAGAGGTAGCCTGGACCCTGATTGAATAAGGCTAGAAGGCC
TAGACTATAGGAGCTTTGCCTGCTCCTGGGTACCAGGTTCCTGTGACTAG
CTGCAGGTCCCCCAACTGCCATAGATT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATTCCTGGGAAGCAAAGGAAGC
AGAAATTCTTGTAGGAAAGGTGGGGCATAGTGGGAGCACATTAACTCCTG
AAAGCAACATTCCATATATGCTTATCCACAGCAAGAATGAACCTATATCT
TCTTACTCTTCTAAGCTTCAGAGAAAGGAACAGCTAGGCCGATGCTGCTG
ACCTAAGTAAATGTAGAAGTAAAACATAATCCATGCATCATGTACTTTTT
GTGCAAGAATGAATTTGGAAGCATTGGCAAAATCCAACACCCCTTCATGA
TAAAAGTCTTATATAAGATCAGGACCCCCCGGCCCATATCTAAACATAGT
AAAAGCAATATAAAGCAAACCAGTAACCAACATCAAACTAAATGGAAAGA
AACTTGAAACAATCCCACTAAAATCAGGGACTAGACAACGCTGCCCACCC
TCTCCCTACCTGTTCAATATAGTACTTGGAGTCCTAGCAAAAGCAATTAG
ACAACAAAAGGAGATCAAAGGGATACAAATTGGAAAGGAAGAAGTCAAAT
TATCACTGTTTGCAGATGTATTATAGTATACTTAAGTGACCCAAAAAATT
CCACCAGAGAACTCCTATACCTGATAAACAACTTCAGCACAGTAGCTGGA
TATAAAATTAACTCAAACAAATCAGTGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_a20.g1 MSMg01no209_a20.g1 CHROMAT_FILE:
MSMg01no209_a20.g1 PHD_FILE: MSMg01no209_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:03 2005
         (286 letters)



>mm_chr15_55549248_55549933
          Length = 686

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattcctgggaagcaaaggaagcagaaattcttgtaggaaaggtggggcatagtgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaattcctgggaagcaaaggaagcagaaattcttgtaggaaaggtggggcatagtgggag 383

                                                                       
Query: 61  cacattaactcctgaaagcaacattccatatatgcttatccacagcaagaatgaacctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cacattaactcctgaaagcaacattccatatatgcttatccacagcaagaatgaacctat 323

                                                                       
Query: 121 atcttcttactcttctaagcttcagagaaaggaacagctaggccgatgctgctgacctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atcttcttactcttctaagcttcagagaaaggaacagctaggccgatgctgctgacctaa 263

                                                                       
Query: 181 gtaaatgtagaagtaaaacataatccatgcatcatgtactttttgtgcaagaatgaattt 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtaaatgtagaagtaaaagataatccatgcatcatgtactttttgtgcaagaatgaattt 203

                                                        
Query: 241 ggaagcattggcaaaatccaacaccccttcatgataaaagtctta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaagcattggcaaaatccaacaccccttcatgataaaagtctta 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)