BAC Information

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BAC

Clone NameMSMg01-209F07
Chromosome15 (Build37)
Map Location 36,764,293 - 36,764,576
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13b, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
Downstream geneZfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209F07.T7 (MSMg01no209_f07.b1)MSMg01-209F07.TJ (MSMg01no209_f07.g1)
ACCAG391895AG391896
length738726
length of high quality
(start - end)
232 (132 - 363)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no209_f07.b1 PHD_FILE: MSMg01no209_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:26 2005CHROMAT_FILE: MSMg01no209_f07.g1 PHD_FILE: MSMg01no209_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTTTTCTACCAGGGCTTCCACTTCTCTGACTACCCACCCCCCCA
TCCTCTACCTGAGGAAGGTACACCCCGTAGCTTGGCAAACCTACAAATTC
CTCTCCCTACACCCCATAAGAACCTGCCCAGCAAATACCTGGGATTCCTG
GAGAGCTTTTCCACACAAAAGAGGCGTTCCCAGTTCACTGAGCTCCAGCC
AGTCATCAACATTCACCCTGAATACTCCTCTCCACTCTCCAAAGTTCATA
TATAGCCCTTGTCCACCCAAATAAAGTAAGTGAGCACCAGCTATTTCACT
GAAGACCATCTAATATTCTCTTCCTTCGCCAGCCCTCTAAAAGAGCTGTA
AGACTATAATCGCCAGAGAAGGCCCCCCTTGATGAAGCCCTCCACCCCAT
GTCCACATGTGAGTTCAGCTGGACTGAGAGCCAGTCCCAACCTGCTCCAG
ACTCCACTTCATCCTTCAAGCCTGGTGCCTGGACACCCTGAGGGAGGAAA
CAGAGGACAGGTAAGCACTTCTGTTACCCAACGCGGCCCACAGCTGGAGG
AAGCTAACACCCACCTGGGAGGATGCTGGTACTTGATGGGCTACGCCATG
TCCCAAACGGGTGTGGTACAGACCTTTGATGGTTTCGCCTACGCCACACT
TGTGTGTGGCACCCACGTTTGCTCTATTATGCCTTGCT
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATCTTTCTCAACCCAGTTACAT
CCTGTTCGGCATGGTGGTCTTTCTCTCTTCTTCCTTTTCCTATTCCTGTT
CTATCCTGCTTGATATCAACCACACAGATGTGCACTTATTCTTGGTGACA
ACCCATAGTTTGACTATGCATGCTCCCTAAGCACTGTAGCCTGTAAATGT
TCTCAGGGGGAGGCACTGTGATGCCAACAGCTAAAACCAAGTGAACAAAA
GGTTTTCTACTTCCTGAGCCCAGAGTTTGGGGTCTTTACCTTTAAAGTGG
TCCTATTTGTTTTGTTTCTTTCCAGGGCTTAACACATTGCAGATGGAGCA
ACTAAAACCACATTTTCTCCCCGAGAAAAAAGAACAGGTCAGCTGTCCCT
CTCATGGGCTTATGTAATTTAATTTTTCTAAACCAAGATACAAAGCTCTA
ATTCATCCCACTTGACATCTTTTTCCTTTTTTTTTTTTTTCTTGGGTTTT
AAATTTTTTTTTTTTTGGATAGACAATTTGTCTTCCGCCTTTTCACACCG
CATAACCCATTGCGATACTTACTGTTTGCCCCCCATAATACCTTGTTATT
ATTGCATCTCTCCTTATTCCCTGTTTCCCGATCTTGCCCCCATTCACGTC
TATTTTTACCTTTTTCCTCGCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_f07.g1 MSMg01no209_f07.g1 CHROMAT_FILE:
MSMg01no209_f07.g1 PHD_FILE: MSMg01no209_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:26 2005
         (287 letters)



>mm_chr15_36764093_36764780
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatctttctcaacccagttacatcctgttcggcatggtggtctttctctcttcttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 acatctttctcaacccagttacatcctgttcggcatggtggtctttctctcttcttcctt 425

                                                                       
Query: 61  ttcctattcctgttctatcctgcttgatatcaaccacacagatgtg-cacttattcttgg 119
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 424 ttcctattcctgttctatcctgcttgatatcaaccacacagatgtgacacttattcttgg 365

                                                                       
Query: 120 tgacaacccatagtttgactatgcatgctccctaagcactgtagcctgtaaatgttctca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgacaacccatagtttgactatgcatgctccctaagcactgtagcctgtaaatgttctca 305

                                                                       
Query: 180 gggggaggcactgtgatgccaacagctaaaaccaagtgaacaaaaggttttctacttcct 239
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggggaggcactgtgatgccaagagctaaaaccaagtgaacaaaaggttttctacttcct 245

                                                       
Query: 240 gagcccagagtttggggtctttacctttaaagtggtcctatttg 283
           |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 244 gagcccagagcttggggtctttacctttaaagtggtcctatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)