BAC Information

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BAC

Clone NameMSMg01-210G16
Chromosome15 (Build37)
Map Location 41,804,875 - 41,805,179
singlet/doubletsinglet
Overlap genenone
Upstream geneZfpm2, Oxr1, Abra, EG432946
Downstream geneLOC432947, LOC100039268, LOC100039197, Angpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210G16.T7 (MSMg01no210_g16.b1)MSMg01-210G16.TJ (MSMg01no210_g16.g1)
ACCAG392542AG392543
length763753
length of high quality
(start - end)
318 (45 - 362)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no210_g16.b1 PHD_FILE: MSMg01no210_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:57 2005CHROMAT_FILE: MSMg01no210_g16.g1 PHD_FILE: MSMg01no210_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTAAAAATATATTAAAGTACACTTAAGAGCTAGGAAATGCTGACC
CTCAGAAACCAGTATAACCTTTGGCACACAGAAACAGAGATGTGTTGCTT
CATCGAATAAAGGGAGCGGCTGTGAAAGGCAGACCAAGTCCCCGCCTGCC
ACCGTGCGGACACTGTTAGAACTGCACCTCATTCTCCGTGATGCCAAGCA
GAGCAAACACTGGAGTTACTTTTAAGTGGACGGAATTGAGGCAAATGCCC
AGATGATCTAGATGAGAAAGGAGTTTTCACTTGAAATATTACCATTATTG
AAACAATTGTATTTTTTCTGGCCCCCCCCCCCCATCTTGGAGTGGAAGGA
TATGAAGAACTGGAGCCCCCATTCTTTTAGCATCCACGGGTCAAGTTCTA
TTTCATTAAAAGAGTTTGTTTAGTTTTCCTAAAATCCGTAATTAGGAATA
GACAAAGAGACGAGTAGTGACAATAAACGTGTAGTGAGGAGATTTCTCAA
AGCTATTTCTCATAGCTGCTTGAACATGGCAGACATTGGCCTTTTTACCA
TGTGTCATCATAGAGCATGATCTGAATGAGAAACACTGTTTGAGGCCTCT
ACAAATATATTTCCCCCATTATTCATGAATTGATTGTTCGACATAGATAC
CAGTCTTTCTCTATTTCAGTCTTCTCTTTCCTTTCCCCTTTTCTTCTTTT
TTTTCTTCTTTCT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAATTGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAAGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGTGCATATCTCCCCAACATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTACGCCCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTG
GATATTACCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTA
AACACATGAAACTCAGGGAGAATGAAGACTGAAGTGTGGACCTTATGCCT
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_g16.b1 MSMg01no210_g16.b1 CHROMAT_FILE:
MSMg01no210_g16.b1 PHD_FILE: MSMg01no210_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:57 2005
         (318 letters)



>mm_chr15_41804671_41805380
          Length = 710

 Score =  499 bits (258), Expect = e-146
 Identities = 297/314 (94%), Gaps = 10/314 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactaaaaatatattaaagtacacttaagagctaggaaatgctgaccctcagaaa 64
           |||||||||||||||||||||| |||||||||      |||||||||||||||||| |||
Sbjct: 205 gaattcactaaaaatatattaaggtacactta------aggaaatgctgaccctca-aaa 257

                                                                       
Query: 65  -ccagtataacctttggcacacagaaacagagatgtgttgcttcatcgaataaagggagc 123
            ||||||| ||||||||||| | |||||||||||||||||||||||  ||||||||||||
Sbjct: 258 tccagtattacctttggcacgcggaaacagagatgtgttgcttcattaaataaagggagc 317

                                                                       
Query: 124 ggctgtgaaaggcagaccaagtccccgcctgccaccgtgcggacactgttagaactgcac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggctgtgaaaggcagaccaagtccccgcctgccaccgtgcggacactgttagaactgcac 377

                                                                       
Query: 184 ctcattctccgtgatgccaagcagagcaaacactggagttacttttaagtggacggaatt 243
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 378 ctcattctccgtgatgccaagcagagcaaacactggagttactt--aagtggacggaatt 435

                                                                       
Query: 244 gaggcaaatgcccagatgatctagatgagaaaggagttttcacttgaaatattaccatta 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gagacaaatgcccagatgatctagatgagaaaggagttttcacttgaaatattaccatta 495

                         
Query: 304 ttgaaacaattgta 317
           ||||||||||||||
Sbjct: 496 ttgaaacaattgta 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 710
Length adjustment: 9
Effective length of query: 309
Effective length of database: 701
Effective search space:   216609
Effective search space used:   216609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)