BAC Information

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BAC

Clone NameMSMg01-211C02
Chromosome15 (Build37)
Map Location 84,704,359 - 84,704,763
singlet/doubletsinglet
Overlap genenone
Upstream gene4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084
Downstream gene4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211C02.T7 (MSMg01no211_c02.b1)MSMg01-211C02.TJ (MSMg01no211_c02.g1)
ACCAG392983AG392984
length1,2391,290
length of high quality
(start - end)
409 (42 - 450)62 (70 - 131)
definitionCHROMAT_FILE: MSMg01no211_c02.b1 PHD_FILE: MSMg01no211_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:00 2005CHROMAT_FILE: MSMg01no211_c02.g1 PHD_FILE: MSMg01no211_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTGCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGAACTTCACTTCTGGGCTGTAGCCCGGGTTTAACAGCAGGTTCCCCA
GCCCACCTTCACACCCCACTCATAAAAGCATTTTAAAATACCATGTTTTG
TGCTCTAAAGGCACTGACGTACTTAAGCAGGAGACATGAATCATGATAGA
GTTGTATAAATAGCACCCTGCTGTTGACAGACCAGTCCCACACCACAATC
TCACTGGCAAGTCCTGGCACTGGCACCTGTTGCCTTCTGTGCTGGTCCCT
CCTCCACATGACATTCGGACTCCTGTCCCCAAGATCCTGGATGGGCAGTG
TCCACAGAGGAGCCACAGGTACCCTAACCACCACCAGGTCACACATTGTT
ATTTCCAGGTTCAGTGAGAGACCCTGACTGAAAAAACAGATAAGGTGGAT
TTTTTTTTCCCCCCCCCCCCTGATGATGACCTCCCCACCCAAAAAAAGAG
GGGCACACAAGCCTCCAGCTGTGTTGGCTCTAATACAAGAGAGTGATTCC
CTCTGTGTCCTTGTGTTGGCTTAGTTCTCATAAACTGGCTTCGGCCACCC
CGTGAGTTCCCACATCAACCGAGCACAGAGCCATCTGACTTCCAGGCGAC
AGGGTTCCTGGGATATCATCTGTGTCATGAATGCACTTAGCCCTTTTCTT
AGTTGCTTCAAGACATGACCACTTGGGCTTAGGTGTGGAGCTCATACAGC
TACATCCCTAGAGCATCCTACCCAGCGTGCAGGCCGCTACACCCCAAGAG
ACCTCCCTGTCTCAGGTCTTTATTGTTTGCGGGAAGGACCTGTGGTTTCC
CTCAGCCCTTTCTTGTGACACTCAGGAGCCCTCCCCCTCGAATCACGAAG
AACGGTTTCACCCAAAGGCACCCTTGCAGAGTATTCTGCTACCCCCCCAT
GGATACCAAGGCCCTAGGCGTGCCCTTTGGCTCCTCTTGAGTTCTCCCGT
TCCGGCAGCCTATTCCCCCTGCCGGTTTGGATTCTACCGCCCCCCTACCT
GTCAAAATAAACACCCTGGTTCCCCCCCCTCCCCTTGGGCCCTCCAAGGT
TTGTAACTCCCAGACTTCCCTTACCCCCAATTCTCTGAAAACCCCGTGCC
CCTGAAACCTCCCGCCCCATGAACTTACTTTTTCTTTTCCCCACCTGTTT
CTCTTGTAATCTCCCCCGATTCTCTTTTATATTATCTGC
NNCCCTGACTGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGATAGAGTCAGGTTGACAACCAGGACTAG
CCATCCCACTCCCCTTGGACTGTGCTGGGAGGGGGAGGCTCAAATGCCTT
TCTGCCCTCCAGGGGGCTCGTTCTTCATTCACACCCATCAGGGGATCATC
ACAAGTCTGTGCAAGACTGCCATAACAAACGGCCACACACAGGGTGACTG
GTGAGTGATAGAAACCTACTCCATATGGATTGGGAAGAGAGATCAGGGTG
CCTGCATGGCCTGGATGCTGTGAGCCTCAGTCCTTAGCTCTTTTCATGGC
CTGTGGTAATTTGGATATGCTTGGCCCAGGGAGTGGTACTGTTAGTTTTT
ACCTTGCTGGAGGAAGTGTGCCTCTGTGGGCTTGGGATTTAAGATTTTTT
TTTTTCCCCCCCCCAAGNAAGCGCCCCCCCCCCCCAAAAAGGGGGGGGGA
TGTTTAATTCTCATTTCCTCCCAAACCATGCCTGCCTGGATGCCGCCATG
CTCCCTTCTTGATGAATAACCGAACTGAATCTCCGAACCTGTAATCCCGC
CCCAGTTAACTCGTCCTTACAACACTTGCCTTGCACCCGCCCTGTCGCCC
GCCACGCCTTTAATCCCCCCCCCCCCCAGTCACAGCCCCTTTGCATTTTC
TGATTTCCATAATCTCCTGTCCTACTACCTGGCTCCCCCCGCACCTCCCC
ATTTTAATTTAAACACCCTCGCTCCTCACAATCCCTCTTCTCTCTCTTCT
CCTTTTTTAACACACCATCGCCTCTGTCCCCATTCGTCATACACGCTCCC
CCCGGCTTTACTCACCCTCGTCCTTCTCTTTCCCAAGTCCCTCGTCCTCC
ACTTCCCCTGACCTCTCCTATTTGGTCCCCTAACCCACCTGTTATTCCTC
TCTTGAACCCCCCCCTCCCGTTGTCCCTATTATTACCCTGTTTCTCATCT
TCTCCCTTCCCCCACCCTTTTCTTCTCTTCCACCCCTCCCTTCTCCCTCT
CCCCCTCCTCCTCCTCTCCTTCCCTCACTTCACTCTCACTTCATTCATCC
TCCACCTTAAATTTTACATTTTTGCCCATTTTCTTCCTTCCTNACTCTTT
CTTCTCTTCCACCCTCTTATCCCCCCTCACTTACACTCCCCCTTTCTTAT
CTCTTTCCACCCCTCTCCCCCTTCTTTCCCTCTCTCTCCTTCCTATCTCC
TTCTTTCTCTCTCTCCTTCCCTTCCACTATCTCTCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_c02.b1 MSMg01no211_c02.b1 CHROMAT_FILE:
MSMg01no211_c02.b1 PHD_FILE: MSMg01no211_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:00 2005
         (409 letters)



>mm_chr15_84704156_84704964
          Length = 809

 Score =  752 bits (389), Expect = 0.0
 Identities = 401/405 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggaacttcacttctgggctgtagcccgggtttaacagcaggttccccagccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggaacttcacttctgggctgtagcccgggtttaacagcaggttccccagccc 263

                                                                       
Query: 64  accttcacaccccactcataaaagcattttaaaataccatgttttgtgctctaaaggcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accttcacaccccactcataaaagcattttaaaataccatgttttgtgctctaaaggcac 323

                                                                       
Query: 124 tgacgtacttaagcaggagacatgaatcatgatagagttgtataaatagcaccctgctgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgacgtacttaagcaggagacatgaatcatgatagagttgtataaatagcaccctgctgt 383

                                                                       
Query: 184 tgacagaccagtcccacaccacaatctcactggcaagtcctggcactggcacctgttgcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgacagaccagtcccacaccacaatctcactggcaagtcctggcactggcacctgttgcc 443

                                                                       
Query: 244 ttctgtgctggtccctcctccacatgacattcggactcctgtccccaagatcctggatgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctgtgctggtccctcctccacatgacattcggactcctgtccccaagatcctggatgg 503

                                                                       
Query: 304 gcagtgtccacagaggagccacaggtaccctaaccaccaccaggtcacacattgttattt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |
Sbjct: 504 gcagtgtccacagaggagccacaggtaccctaaccaccaccaggtcacacattgtgaggt 563

                                                        
Query: 364 ccaggttcagtgagagaccctgactgaaaaaacagataaggtgga 408
           ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 564 ccaggttcagtgagagaccttgactgaaaaaacagataaggtgga 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)