BAC Information

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BAC

Clone NameMSMg01-212C23
Chromosome15 (Build37)
Map Location 14,759,910 - 14,760,207
singlet/doubletsinglet
Overlap geneLOC100040024
Upstream geneLOC666708, LOC674819
Downstream geneLOC100040033, LOC100040046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212C23.T7 (MSMg01no212_c23.b1)MSMg01-212C23.TJ (MSMg01no212_c23.g1)
ACCAG393633AG393634
length716721
length of high quality
(start - end)
520 (39 - 558)285 (69 - 353)
definitionCHROMAT_FILE: MSMg01no212_c23.b1 PHD_FILE: MSMg01no212_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:52 2005CHROMAT_FILE: MSMg01no212_c23.g1 PHD_FILE: MSMg01no212_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ATAGGTTTCCCTTTATATGTTAGTTGACCTTTTTCCCTTACTACTTTTAA
TATCCTTTCTTTGTTTCCCGCATTTGGTGTTTTGATTATTATATGATGGG
ATGAATTTCTTTTCTGATCCAATCTATTTGTTGTTTTGTGGGCTTCTTAT
ATGTTCATGGGCATCTCTTTCTTTAGGTTAGGGAAGTTTTCTTCTATAAT
TTTGTTGAAGATATTTACTGGCCCTGTAAGGTGGTAATCTTCACTCTCTT
TTATACCTATTATCCTTACATTTGGTCTTCTCTTTTTGTCCTGGATTTCT
TGGATGCTTTGTGTTAGGATCTTTTTGCATTTTGCATTTTCTTTGACTGT
TGTGTCAACGCCTTCTATGGTCTTCTGCACCTAAGTTTCTCTATTTTATT
TCTTGCACTCTGTTGATAATGTAGCATCTATGACTCTTGATCTCTTTCTT
AGGTTTTCTCTCTCCAGAGTTGTCTCATTCTGAGATTTCTTCATTGTTTC
TACTTCCATTTTTAGATCCTGGATGATTTTGTTCAATTCCTTCACCTATT
TGTTTGAGTTTTCCTCTAATTCTTTAAGGAACTTTTCTATTTCCTCTATA
AGTTCTTCTACCTGTTTACCTATGTTTTCCTATATTTCTTTTAAGAAGCT
ACTTATGTTCTTCTTA
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAGCAACTGTTAATCCTATTGAGGACCTAC
ATTTGTTTTTCAGAACATCCATCACCACTTGTGACAACCTTGAACTTCAG
GTTCACAAAATTTAATATACTCTTCTAATCTCTGAAGACAGGACGCATAT
GTGGTATACATTCATGTATAAATAAGGAGTAAATACTCAGACATGTAAAA
TACTTTAAGTATATATTAGTAACAAGGAGGCATAACTTATTAATTTTCTT
TGCTTTTTATTTTATTTTTAGTAATTGTTATGTACTTAATTTAAGTCAGA
ATCATTTTTTCTCCCCTCCCACCCTCTCCCAGTCCCTACTTCCCATGATC
TTCTCCCTCATGCAACACTCCTCCTTTTTTCAGAAAAAGGGAGTTGCAGG
AAATCTAGGTATATATTATTCTATTGAGGCTAGAGAAGGTAGGTCAGTTA
TTGGAAAAGAGATCCTGATCCTGCCTTAGTGTTTCACATGAAGACTCAGC
TATACAACCATTACATATGTGCAGAGGGCCTAGGTCCACTGCATGCTTAT
TCTAAGTTTGGCAGCTCAACCTCTATTCATCACTAGGTGTCAAGGTTAGA
TGATTCTGCAAGTTATCCTGTTATTTCCTTGATGCCCTTAGCTCCTTCAG
TCCTCCCACCTTCCATAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_c23.g1 MSMg01no212_c23.g1 CHROMAT_FILE:
MSMg01no212_c23.g1 PHD_FILE: MSMg01no212_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:52 2005
         (285 letters)



>mm_chr15_14759723_14760407
          Length = 685

 Score =  484 bits (250), Expect = e-141
 Identities = 281/298 (94%), Gaps = 13/298 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagcaactgttaatcctattgaggacctacatttgtttttcagaacatccatcaccac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 188 aagagcaactgttaatcctattgaggacctacatttgtttttcagaccatccatcaccac 247

                                                                       
Query: 61  ttgtgacaaccttgaacttcaggttcacaaaatttaatatactcttctaatctctgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttgtgacaaccttgaacttcaggttcacaaaatttaatatactcttctaatctctgaaga 307

                                                                       
Query: 121 cagga--c----g-------catatgtggtatacattcatgtataaataaggagtaaata 167
           |||||  |    |       ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 308 caggatacatatgtggtatacatatgtggtatacattcatgtataaataaggactaaata 367

                                                                       
Query: 168 ctcagacatgtaaaatactttaagtatatattagtaacaaggaggcataacttattaatt 227
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 368 ctcagacatgtaaaatactttaagtatatattagtaacaaggaggcaaaacttattaatt 427

                                                                     
Query: 228 ttctttgctttttattttatttttagtaattgttatgtacttaatttaagtcagaatc 285
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 428 ttctttgctttttattttatttttattaattgttatgtacttaatttaagtcagaatc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)