BAC Information

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BAC

Clone NameMSMg01-212N04
Chromosome15 (Build37)
Map Location 27,805,365 - 27,919,201
singlet/doubletdoublet
Overlap geneTrio
Upstream geneFbxl7, LOC625311, Ank, BC087945, LOC100040622, BC052328
Downstream geneLOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212N04.T7 (MSMg01no212_n04.b1)MSMg01-212N04.TJ (MSMg01no212_n04.g1)
ACCAG394038AG394039
length741754
length of high quality
(start - end)
317 (46 - 362)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no212_n04.b1 PHD_FILE: MSMg01no212_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:42 2005CHROMAT_FILE: MSMg01no212_n04.g1 PHD_FILE: MSMg01no212_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,805,365 - 27,805,675)(27,918,918 - 27,919,201)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCATTGTTAATTTTAAAAGACTAAAACACAATATATCTTTATAT
TAAAAGCTAAATTAATTAAAAACAAATGGAAGCTTGTTATATATGTGGAG
AAGTTCAATTCATATTACAAATGTGGACATAACATTCTCCTAGAAAAACA
CTGAGCACAGCAGGGACACCCACTACTCTCCTGAAAATGTGGGAAGAGCT
TCGTCGAGTGACAAATTCTCAGACCCTTATCTAGGAAGACAAGGTGATCA
CAAGGCACACAAAAAGCTATCCATAGACAAGCTTCGAGGAGGCTGCCTTG
GGGCAGGTTATTATATAGGCACACCCTCACCCGCAGGGTTGGGCAAGCAT
CACACAGTGGGACCTATGGAGAGACGCTAGGCCACACTCACCAATGTCTG
TCAGTGCCCCGCTGCTCTCGGGAACCAGCTGTCATAAACTAAGTTTCTCT
GGGCTTTACCAGCCTGTTGCGATCACAGCTTATTAAATTTAATAATATGA
ACTCAGAAAACTACTACTAAGTAAAAGACTGCTGCTCAAGGACCATCTTC
TCTTCCACCAGTCACCTTCAAAAATCTTCACATGGAACGCGTTTTAAGCT
TTTGGGTTTTGTTTGGTTTGGCTGCTTTTTTGAGACAGGGTTTCCCTGTA
TATCCCTGGCTGCATTTTTAATAGTACAGTAACACAAGAAA
CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGAGTTTGGTCAGATGCAGGCTA
CTATTTTGGAATAGGACTATGAGAACCCTGTTCTGAGACGGGTGTGTCCT
CCTGAGGTTCCCAGCCGGGGCTAAGGCTGGCTGGGAGACTATCCAACTGG
TAGCAAACCTAGCCTCGACCAGGGGGCCTAGCTAACCGCAAAGGTAATGT
CGGATTCAGACACCGAAGAAAGCCAAGGAAGATGGTGTCCATAGAAATCC
AGCACTCTCTGAATTGGTTTCTGTTGCTGTGACAAAACACTGACCAATAA
CAACCAATATTTTTTTTATTCCCCTCCCCCCCTTACAGTGTGTCATGAAG
GGAAGTCACAGCAGGAACTTTTGAAAAAAAAAACTGAGGTTGAAGCCTGT
GGAGAAGCCTGCTTCCTGGCCTGCTCGTCATGGCTTGCTCAGCCTGCCTT
TTATGTATACGTATATGTATGTATATGTACAGGTACATACACTTACACAC
ACTCACATATACACCCTCACACTCTTTTTTACTTCTCTACCCAGAACCAC
TTCCAGGGCCGGGTATTGCCCCACAAGTGCCTGGGCCCTCTCCCAAGGAT
TACCATCTCAGGGAAATTACCCCCCCAGATGGGCCCCCACAGGCCAGTGG
CGCAATTAAGGCTCCTCATCTGAGTTTCCCCTTCTTTCCAAGTTGAATTC
TTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_n04.b1 MSMg01no212_n04.b1 CHROMAT_FILE:
MSMg01no212_n04.b1 PHD_FILE: MSMg01no212_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:42 2005
         (317 letters)



>mm_chr15_27805161_27805877
          Length = 717

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccattgttaattttaaaagactaaaacacaatatatctttatattaaaagcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccattgttaattttaaaagactaaaacacaatatatctttatattaaaagcta 264

                                                                       
Query: 65  aattaattaaaaacaaatggaagcttgttatatatgtggagaagttcaattcatattaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattaattaaaaacaaatggaagcttgttatatatgtggagaagttcaattcatattaca 324

                                                                       
Query: 125 aatgtggacataacattctcctagaaaaacactgagcacagcagggacacccactactct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgtggacataacattctcctagaaaaacactgagcacagcagggacacccactactct 384

                                                                       
Query: 185 cctgaaaatgtgggaagagcttcgtcgagtgacaaattctcagacccttatctaggaaga 244
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 cctgaaaatgtgggaagagcttcgtcgcgtgacaaattctcagacccttatctaggaaga 444

                                                                       
Query: 245 caaggtgatcacaaggcacacaaaaagctatccatagacaagcttcgaggaggctgcctt 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaggtgatcacaaggcacataaaaagctatccatagacaagcttcgaggaggctgcctt 504

                      
Query: 305 ggggcaggtta 315
           |||||||||||
Sbjct: 505 ggggcaggtta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no212_n04.g1 MSMg01no212_n04.g1 CHROMAT_FILE:
MSMg01no212_n04.g1 PHD_FILE: MSMg01no212_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:42 2005
         (294 letters)



>mm_chr15_27918762_27919455
          Length = 694

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggagtttggtcagatgcaggctactattttggaataggactatgagaaccctgttctg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 ttggagtttggtcagatgcaggctactattttggaataggactctgagaaccctgttctg 381

                                                                       
Query: 61  agacgggtgtgtcctcctgaggttcccagccggggctaaggctggctgggagactatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agacgggtgtgtcctcctgaggttcccagccggggctaaggctggctgggagactatcca 321

                                                                       
Query: 121 actggtagcaaacctagcctcgaccagggggcctagctaaccgcaaaggtaatgtcggat 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 320 actggtagcaaacctagcctcgaccagggggcctagctaaccgcagaggtaatgtcggat 261

                                                                       
Query: 181 tcagacaccgaagaaagccaaggaagatggtgtccatagaaatccagcactctctgaatt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 260 tcagacaccgaagaaagccaaggaagatggtgtccatagaaatccaacactctctgaatt 201

                                                       
Query: 241 ggtttctgttgctgtgacaaaacactgaccaataacaaccaata 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggtttctgttgctgtgacaaaacactgaccaataacaaccaata 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)