BAC Information

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BAC

Clone NameMSMg01-213A20
Chromosome15 (Build37)
Map Location 21,363,864 - 21,364,153
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213A20.T7 (MSMg01no213_a20.b1)MSMg01-213A20.TJ (MSMg01no213_a20.g1)
ACCAG394183AG394184
length730726
length of high quality
(start - end)
321 (37 - 357)293 (65 - 357)
definitionCHROMAT_FILE: MSMg01no213_a20.b1 PHD_FILE: MSMg01no213_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:59 2005CHROMAT_FILE: MSMg01no213_a20.g1 PHD_FILE: MSMg01no213_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATAAAGAA
AACCCAAAGCAAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAGATCTG
GAACCATAGATGCGAGCATCAGCAACAGAATACAAGAAATGGAAGAGAGA
ATCTCAGGTGCAGAAGATTCCATAGAGAACATCGACACAACAGTCAAAGA
AAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGAAATCCAGG
ACACAATGAGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAA
GATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGA
AAACTTTCCTANATTAACCCCCCCCCCCGCCCATGATCATACAAGAAGCC
TAAAGAACTCCAAATACACTGGACCAGAAAAGAAATTCCTCCCGACACAT
AAAAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAG
TAAGGGAGAAAGGTCAAGAAACATATGAAGGAAGGCCTATCAGAATTACA
CCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT
TATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTAATATACCCGG
CCAAACTCTCAATTACCATAGATGGAGAAACCATAGTATTCCACGACAAA
ACCAAATTCACACAATATCGTTCCATGAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTCTATAATGTATTCATGAGTCAAGCCAACCTTTT
GATTTATTCTGACGACTTAAGCAGTTACTTAAAAATAGAACTTTTACTAC
ATAAGGTCATGCCTGTCATTAACAAGGAGCATGTCAATTTTATGATGACT
TGAATAAAAATATCACAACTATTATAATATTTCATGGTCTGATAGAGATT
TAGTTCTTTACACCCTTAATGTTATTTATTTTCATTAATTTAATACTGGC
CTAAGAGCACTAACAATTTCAATTTTGTGGGAATTCTTGGTTTGCATCTA
AAGTTTTTATTAAACCCCGCCCCCCACAACATGAAAGATGGGATTTATTT
ATTTTCCTTTTACCTTCCTTTGAAATGACCAAATTAAATATTTTGCAGCA
ATGACTGCTGTCTCATACATTGCACACATGTTATTTAAAATTGTAACATA
GGAAGTGTTGATATAAAAATTTCATGCTATTGTCCTATAATCGCAGATAC
TCAGGAAGCAGAGGCAGGAGAAAAAAAGATTGGGAGAGTGTAACCAAATA
CAGTAGAATCGTCCTAAAATACATATATAATTGAAGGTGTTCTCAGTGGA
AGCACAAACTAAATGGTTGCTACATGTTGCGCGGATTATAAAAAATGACA
AACAGCTATCTCTCTTGCCCCATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_a20.g1 MSMg01no213_a20.g1 CHROMAT_FILE:
MSMg01no213_a20.g1 PHD_FILE: MSMg01no213_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:59 2005
         (293 letters)



>mm_chr15_21363664_21364356
          Length = 693

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctataatgtattcatgagtcaagccaaccttttgatttattctgacgacttaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctataatgtattcatgagtcaagccaaccttttgatttattctgacgacttaagcag 260

                                                                       
Query: 61  ttacttaaaaatagaacttttactacataaggtcatgcctgtcattaacaaggagcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacttaaaaatagaacttttactacataaggtcatgcctgtcattaacaaggagcatgt 320

                                                                       
Query: 121 caattttatgatgacttgaataaaaatatcacaactattataatatttcatggtctgata 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattttatgattacttgaataaaaatatcacaactattataatatttcatggtctgata 380

                                                                       
Query: 181 gagatttagttctttacacccttaatgttatttattttcattaatttaatactggcctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagatttagttctttacacccttaatgttatttattttcattaatttaatactggcctaa 440

                                                             
Query: 241 gagcactaacaatttcaattttgtgggaattcttggtttgcatctaaagt 290
           ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gagcactaacaatttcagttttgtgggaattcttggtttgcatctaaagt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)