BAC Information

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BAC

Clone NameMSMg01-213E15
Chromosome15 (Build37)
Map Location 50,421,781 - 50,546,687
singlet/doubletdoublet
Overlap geneTrps1
Upstream geneLOC100039539, LOC665160
Downstream geneLOC100039644, LOC100039662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213E15.T7 (MSMg01no213_e15.b1)MSMg01-213E15.TJ (MSMg01no213_e15.g1)
ACCAG394336AG394337
length758777
length of high quality
(start - end)
281 (34 - 314)165 (64 - 228)
definitionCHROMAT_FILE: MSMg01no213_e15.b1 PHD_FILE: MSMg01no213_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:17 2005CHROMAT_FILE: MSMg01no213_e15.g1 PHD_FILE: MSMg01no213_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,421,781 - 50,422,057)(50,546,526 - 50,546,687)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTATGT
GCTATACATCTCATAAGTAGAACAGATATGCAAGGCTTGAATTTACAATC
CAGCACTGTATGCCTGTAGGATATGAAACACAACACTACAGTCAAATTTT
ATGCCTTCAATCTACCTGCCCTACTTCATCAAATACTTGTTCACAATAAG
GTCTTATTTTATATGATGTTTCAAAACTTATATACCACAATAAACAACTG
TTGATTTTTCCTATTGTCCTTTCCTGAGTTGAGTTCACCAGATAACTAGC
AATCCTTATTAAGTTATAGTCACTGTCAATTATTAGAGGGGAGAAAACAT
ATTACTTTGATCTACTTCCACCAGGCCTCTTCTACATGTTACTATTGTTA
ATATTGCTCGCACTCGGAAATATCTTGCGCTTCCTTCCTACTATCACACC
TACATTATAATACAACCTTTTACATTTCTTGGAAGATGTAATATACCTTA
CAATAAAAAATATCCAGGGTCTAATGGCCAACTATAAAGTCCTTCCTAAA
ATACCATTTAATTTGAAAAGGGCTTGTGCATGGATTAGTTGCGAAATGTA
AAAAAGGCAAGCGGATATGCTCATGTTAATTATAATTTAATTTTTAAAAT
TTTTCTTCTACTTTTTTAACTTTCTTTGTACGTTCATTTTTTTTATCAAT
AATTCTTACACACCTTAGTATTTATCACGTATTTACCATTATACACTTCT
ATTTATTT
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTTTCTCAAATCCTGGACCAGATTAAGCAAATGC
CCCATTTACATAAATAAACTTTTTAATTAAGCAGAGTCTGTAACTATGTC
AAAAACAATAAAACGGATGATTTGTCAGAAATAAACTACAGGGCATCTGA
TCCTTTGAACATAATTGGAAATTTAGTATGCAGAAATATGAATCAAAATA
CAGGGTGTCTGTACAGGGTTCTTGGTGAGCCACAGTTTACAATAATGTCT
GTGCTATTATTATTTTGGAAATTTTAACTCCACAACAAATACCGTGTCCT
CCTGTGTCATTTTTGCACCCCCTGATACTGGATATCAAGGAACAGTGTTC
TTCTTGGACAGCTTCCATAGACCTGGAATCTCCAGAATATGCCCACTAGG
GAGAACAGTGTTGCTAGCATCTTCCTGATTTACACCCAGTCCTGTGGTAC
TCAGGGCTAGACTCAAGGATGGGGGTAAATTCTTGCCTGCTAAGGATGAC
TCTCATTCTGAAATCTGTTGAAATGGTATGCAATTGCTCTAATTTTAATA
CTATAAAGCTTATTTTGTTGCATGCTTGCTTGTAGCTGTTCTTTTTGCAC
TACCAAGAAAATGGTTTTTCTCTTGATAATCACCCTTGAAATTGACCTTG
TAAAATCCACTTCCTGGNACAACTCTATCATTGTGTACCTTCCTATCTTT
TTCTAATTTCAACTGCTGGGCACTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_e15.b1 MSMg01no213_e15.b1 CHROMAT_FILE:
MSMg01no213_e15.b1 PHD_FILE: MSMg01no213_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:17 2005
         (281 letters)



>mm_chr15_50421577_50422257
          Length = 681

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattatgtgctatacatctcataagtagaacagatatgcaaggcttgaatttaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatgtgctatacatctcataagtagaacagatatgcaaggcttgaatttaca 264

                                                                       
Query: 65  atccagcactgtatgcctgtaggatatgaaacacaacactacagtcaaattttatgcctt 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atccagcactgtatgtctgtaggatatgaaacacaacactacagtcaaattttatgcctt 324

                                                                       
Query: 125 caatctacctgccctacttcatcaaatacttgttcacaataaggtcttattttatatgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caatctacctgccctacttcatcaaatacttgttcacaataaggtcttattttatatgat 384

                                                                       
Query: 185 gtttcaaaacttatataccacaataaacaactgttgatttttcctattgtcctttcctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 gtttcaaaacttatataccacaataaacaactgttgatttttcctattgccctttcctga 444

                                                
Query: 245 gttgagttcaccagataactagcaatccttattaagt 281
           |||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttgagttcaccagataactagcaatccttattaagt 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no213_e15.g1 MSMg01no213_e15.g1 CHROMAT_FILE:
MSMg01no213_e15.g1 PHD_FILE: MSMg01no213_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:17 2005
         (165 letters)



>mm_chr15_50546323_50546887
          Length = 565

 Score =  306 bits (158), Expect = 6e-88
 Identities = 161/162 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ctttctcaaatcctggaccagattaagcaaatgccccatttacataaataaactttttaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctttctcaaatcctggaccagattaagcaaatgccccatttacataaataaactttttaa 306

                                                                       
Query: 64  ttaagcagagtctgtaactatgtcaaaaacaataaaacggatgatttgtcagaaataaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttaagcagagtctgtaactatgtcaaaaacaataaaacggatgatttgtcagaaataaac 246

                                                     
Query: 124 tacagggcatctgatcctttgaacataattggaaatttagta 165
           ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 245 tacagggcatctgatcctttgaacataattgaaaatttagta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)