BAC Information

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BAC

Clone NameMSMg01-214D06
Chromosome15 (Build37)
Map Location 74,473,339 - 74,591,184
singlet/doubletdoublet
Overlap geneArc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1
Upstream geneGpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik
Downstream geneLy6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214D06.T7 (MSMg01no214_d06.b1)MSMg01-214D06.TJ (MSMg01no214_d06.g1)
ACCAG394933AG394934
length728708
length of high quality
(start - end)
232 (127 - 358)286 (59 - 344)
definitionCHROMAT_FILE: MSMg01no214_d06.b1 PHD_FILE: MSMg01no214_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:27 2005CHROMAT_FILE: MSMg01no214_d06.g1 PHD_FILE: MSMg01no214_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,590,955 - 74,591,184)(74,473,339 - 74,473,622)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGCCATGCCAGCCACATTCCATTCGCAACACTTCCCGCTCCTCT
CTGCAGGTGCTCTGCATTATTCCGGGCATAGAAGCCACCTGCACATGGGA
GTTAGGCAGAGAAGAGGGCTAGTGAAGCCCAAACTGAAGTTCTAACCATT
TCCAAGTGTGGAAACAGTCTGGGAGCTGGGAAGTGACTCCTAAGTGCCCC
CCTATCAGGTCAGGCATAGGAATGCTAGTGATGAAGACCCCTGACAGCTC
CCTGGAGACAGGAAAGGATGTAGTCCCACCCAAGAAATCAGGAAGCCCAC
AGACCATTTTTTTTCTGGCACCCCCCCCCACAACCAGTGTCATCAGCTGG
GTCTATGATGGCTTGCCACAGCTGAAAAGAAAAGGACTGCTGTTGTGTGT
CCTTTTCTGGTGAGATATGAACCCCAGACATGGCACTGATGGCAAAGGAA
CAATTTATCCAGGTCCTTTGGAGGCTGTGTAAAGGAATGTGTGTGAATGG
CCACTTGAAGACATGGGTGACTCAAAGGTAGCCATATCATGAAAACTCCC
ACCTCAGTCTGGGGGATAGCTCATGAAAGGTTCCTCCTTATAGAGTCCCC
TGTCTTCTTACTGTATAAGCCTGGGGCAATGGATCTGAGGAATCTTGTGA
GTTTTGGGCGCTCCCTGATACCTACGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTAGCAGGTTAGCCCACTGCCACACCCATACACCAAACTCTTC
CCTTCTCAAAGGCCCTCCCTACTCACAGGGATTCAGTGTTCTTAACAGGT
TGCAGCAGAGGTGAACTCTGGGCCCCATAGTCCCTCGGCTCATGCCTGCT
GAAGGATTAATCTTGTGTGCAGAAAGTACCCGTGCAGCCTGGTTACAATG
TAAGGTTTCCCCCAAACAAAAGATGTGAAAGGCCAATGATTTTGGCCCCC
TTTCCTTGACATCTCTTGCTGAAGGAAACAAGTACTCTGCTGTTTGTTAC
TGCCTAGCAGNCCCCGGCCCCCTTGCCCAGTATCAGCCTGCCTTACATCC
CCGACATAAAATAATAATTGCCTAACTTTCTCTGGCACTTTGTGATGTTC
TATGCCAAGTGCATGAGTGAGAATAGAGAAGGAGGCCCAGGGCCCATCTG
ATCCGATGGTGAACCAGCTGAGGATAGGCATCCCTTGGAGGCTTCAGTTG
CTGATTGTTTGCCTGGGAGCAGACTAGTGGATTAGGGAGTCTTCCCCAGA
CATCGTCTGAGAGGTACTGGCGTGAGCTCTGGCAGCCTTTTGAGTTTCCA
GAGCAGGGACTTGATTGTGCACATGAGGTCTAGATAGCCTATATGATTCA
GGTTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_d06.b1 MSMg01no214_d06.b1 CHROMAT_FILE:
MSMg01no214_d06.b1 PHD_FILE: MSMg01no214_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:27 2005
         (232 letters)



>mm_chr15_74590755_74591386
          Length = 632

 Score =  422 bits (218), Expect = e-122
 Identities = 227/230 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagaagccacctgcacatgggagttaggcagagaagagggctagtgaagcccaaactg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 catagaagctacctgcacatgggagttaggcagagaagagggctagtgaagcccaaactg 371

                                                                       
Query: 61  aagttctaaccatttccaagtgtggaaacagtctgggagctgggaagtgactcctaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aagttctaaccatttccaagtgtggaaacagtctgggagctgggaagtgactcctaagtg 311

                                                                       
Query: 121 cccccctatcaggtcaggcataggaatgctagtgatgaagacccctgacagctccctgga 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 310 cccccctatcaggtcaggcataggaatgctagtgatgaagacccttgacagctccctgga 251

                                                             
Query: 181 gacaggaaaggatgtagtcccacccaagaaatcaggaagcccacagacca 230
           ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 gacaggaaaggatgtagtcccaccccagaaatcaggaagcccacagacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no214_d06.g1 MSMg01no214_d06.g1 CHROMAT_FILE:
MSMg01no214_d06.g1 PHD_FILE: MSMg01no214_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:27 2005
         (286 letters)



>mm_chr15_74473139_74473824
          Length = 686

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcaggttagcccactgccacacccatacaccaaactcttcccttctcaaaggccctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcaggttagcccactgccacacccatacaccaaactcttcccttctcaaaggccctcc 260

                                                                       
Query: 61  ctactcacagggattcagtgttcttaacaggttgcagcagaggtgaactctgggccccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactcacagggattcagtgttcttaacaggttgcagcagaggtgaactctgggccccat 320

                                                                       
Query: 121 agtccctcggctcatgcctgctgaaggattaatcttgtgtgcagaaagtacccgtgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtccctcggctcatgcctgctgaaggattaatcttgtgtgcagaaagtacccgtgcagc 380

                                                                       
Query: 181 ctggttacaatgtaaggtttcccccaaacaaaagatgtgaaaggccaatgattttggccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggttacaatgtaaggtttcccccaaacaaaagatgtgaaaggccaatgattttggccc 440

                                                       
Query: 241 cctttccttgacatctcttgctgaaggaaacaagtactctgctg 284
           |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 cctttccttgacatctcttgctgaaggaaacaagcactctgctg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)