BAC Information

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BAC

Clone NameMSMg01-215L07
Chromosome15 (Build37)
Map Location 88,526,838 - 88,546,303
singlet/doubletdoublet
Overlap geneBrd1
Upstream geneAW049604, LOC100042329, LOC100042340, Zdhhc25
Downstream geneZbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215L07.T7 (MSMg01no215_l07.b1)MSMg01-215L07.TJ (MSMg01no215_l07.g1)
ACCAG395858AG395859
length739748
length of high quality
(start - end)
322 (30 - 351)416 (128 - 543)
definitionCHROMAT_FILE: MSMg01no215_l07.b1 PHD_FILE: MSMg01no215_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:27 2005CHROMAT_FILE: MSMg01no215_l07.g1 PHD_FILE: MSMg01no215_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,545,988 - 88,546,303)(88,526,838 - 88,527,253)
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGCATTGATT
TCTATGTAGCAAAGCAGACTGCTTCGGAATCGTACCGGGACAGCGGGTTT
ACTTATGGCCTGATCTGTGTAGATTTGTGTACAGGGTCCTGTCTTCGTGA
GCCTATAGCATGGTGGAGTGCAGACAGTGGCTCAATTACCCATGACCTTT
TAAAGATGAAAACCAGGCCAGGAGCAAACCACTTGAGTTTTGCCTATCCC
TAAATATACAAGCTCAGGCCTGTTGGAAACCTATCCAAAATGCTCTTATG
TTACTCATAAGTCTGTTTCTAAGGAGCAGGAAGCTGTCCAGATGATGCTT
ATTTTATTTGGTTCCTCCCCTCTTTGTTTATTTGGAGATAGGGTCAACCT
AGAATCTTGCTATATATACTGAACTTGAACTCACAGAACTCAGTCTCTGC
CTCCTAAAAGTTGAAATTAGAGGTGCACATGGCCACAGCTGGCAATGTTT
GTGAACTCCCCTTTCCATGTATTTTGCTCCCTTTGCCTATATGTGATGAG
TGAAGTACCCTAGTGCATTAATGTGGTCGCTAAAGTGTGCATCAAAGACA
GATCATGCCATTTCCCATCCTGTGCTGCCATTTTTCTACCATTGAAGAGT
GGCTGTTTATACTTTTGGGCTTGATGGAATCTTTGTCCCCAAAAACCCCA
TCTTTTGAACGTTTGTGATGATACCTTTGAATTAAATTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTACAAGTTCAGTGCCAGATGAAC
CTGGAAAAGACCAGAAGGTTCTGAACACTCCAAGTCCTCAAACAGCGAAG
AACTGCAACTTGAAACAAGAAATCCAGGTGCGCAGAGAGCACCACAAGGT
TCAAGTGGAGGCACAGCCAGCACCGATGGTAGGATGGGCCTGTTCAGCCC
AGGCCTGGCCCACCATGGGCCAGGCAGATGCAGCAGTGGACGCCTCCTGT
TCCTGAGGGTCAGATCTTAGTGCTAACAAGGCTCCCGGCTGCTCAGGAGT
GCGATTAGGAATTCATCATGCATCCACTGAAAGCTACTGCCATTCTGGAA
TAAGAAAGCAGAAATCTCCATTTCAGTCAGGATCAAAGGCACTGGGGATC
ACACATCCTAAAGTTAAGACTCCTTGGGACTCACCGTTGTCACTGAGAAC
CCAGAAAAGAACTGAGATGTGCAAACACATAACATTTCATGACCTCGTGA
TTAGTAGCCCCCGGCGAACAATGGCCCAGCATAGCCCACATGGCTAACTA
GGCTTCCTGGCAAAAGCTGCCAGGTACAAAGCAGGGGCTCTGGACAGCAG
CTACTTGGTGAAAGCTTTTTCTACAGTGTCTTACAGGGTTAACAAACTTT
CTGCTGCTGGTAGATTTGAACCCTGGAAGAGGCAGAAAGCCATCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_l07.b1 MSMg01no215_l07.b1 CHROMAT_FILE:
MSMg01no215_l07.b1 PHD_FILE: MSMg01no215_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:27 2005
         (322 letters)



>mm_chr15_88545784_88546505
          Length = 722

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagcattgatttctatgtagcaaagcagactgcttcggaatcgtaccgggacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattccagcattgatttctatgtagcaaagcagactgcttcggaatcgtaccgggacag 461

                                                                       
Query: 65  cgggtttacttatggcctgatctgtgtagatttgtgtacagggtcctgtcttcgtgagcc 124
           |||||||||  ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cgggtttacagatgggatgatctgtgtagatttgtgtacagggtcctgtcttcgtgagcc 401

                                                                       
Query: 125 tatagcatggtggagtgcagacagtggctcaattacccatgaccttttaaagatgaaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tatagcatggtggagtgcagacagtggctcaattacccatgaccttttaaagatgaaaac 341

                                                                       
Query: 185 caggccaggagcaaaccacttgagttttgcctatccctaaatatacaagctcaggcctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caggccaggagcaaaccacttgagttttgcctatccctaaatatacaagctcaggcctgt 281

                                                                       
Query: 245 tggaaacctatccaaaatgctcttatgttactcataagtctgtttctaaggagcaggaag 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 280 tggaaacctatccaaaatgctcttatgttactcagaagtctgtttctaaggagcaggaag 221

                           
Query: 305 ctgtccagatgatgct 320
           ||||||||||||||||
Sbjct: 220 ctgtccagatgatgct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no215_l07.g1 MSMg01no215_l07.g1 CHROMAT_FILE:
MSMg01no215_l07.g1 PHD_FILE: MSMg01no215_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:27 2005
         (416 letters)



>mm_chr15_88526638_88527453
          Length = 816

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccaagtcctcaaacagcgaagaactgcaacttgaaacaagaaatccaggtgcgcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccaagtcctcaaacagcgaagaactgcaacttgaaacaagaaatccaggtgcgcagag 260

                                                                       
Query: 61  agcaccacaaggttcaagtggaggcacagccagcaccgatggtaggatgggcctgttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 agcaccacaaggttcaagtggaggcacagccagcaccgatggtaggatgggcccgttcag 320

                                                                       
Query: 121 cccaggcctggcccaccatgggccaggcagatgcagcagtggacgcctcctgttcctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaggcctggcccaccatgggccaggcagatgcagcagtggacgcctcctgttcctgag 380

                                                                       
Query: 181 ggtcagatcttagtgctaacaaggctcccggctgctcaggagtgcgattaggaattcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcagatcttagtgctaacaaggctcccggctgctcaggagtgcgattaggaattcatc 440

                                                                       
Query: 241 atgcatccactgaaagctactgccattctggaataagaaagcagaaatctccatttcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcatccactgaaagctactgccattctggaataagaaagcagaaatctccatttcagt 500

                                                                       
Query: 301 caggatcaaaggcactggggatcacacatcctaaagttaagactccttgggactcaccgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggatcaaaggcactggggatcacacatcctaaagttaagactccttgggactcaccgt 560

                                                                   
Query: 361 tgtcactgagaacccagaaaagaactgagatgtgcaaacacataacatttcatgac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcactgagaacccagaaaagaactgagatgtgcaaacacataacatttcatgac 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)