Query= MSMg01no215_m17.b1 MSMg01no215_m17.b1 CHROMAT_FILE:
MSMg01no215_m17.b1 PHD_FILE: MSMg01no215_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:33 2005
(276 letters)
>mm_chr15_73287310_73287982
Length = 673
Score = 484 bits (250), Expect = e-141
Identities = 271/284 (95%), Gaps = 11/284 (3%)
Strand = Plus / Plus
Query: 1 tggcttgactaagtattaataaaacaaaacttgcatgctccacagcatggctatacc--- 57
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 193 tggcttgactaagtattaataaaacaaaactcgcatgctccacagcatggctataccgct 252
Query: 58 -----tactgccacctagtgacaagatctaacaattgcaggggaagaaccaaaaaaaaaa 112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atacctactgccacctagtgacaagatctaacaattgcaggggaagaaccaaaaaaaaaa 312
Query: 113 aaaagtttccaggagtagtacgcaaaacccaaagttataaaatgacagtttccattggaa 172
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 a---gtttccaggagtagtacgcaaaacccaaagttataaaatgacagtttccattggaa 369
Query: 173 gctgtcatcatgctgttgaggaaatatttgttgaatgaataattcattgccaagctgtcc 232
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 370 gctgtcatcatgctgttgaggaaatatttgttgaatgaataattcactgccaagctgtcc 429
Query: 233 tgtcagctgccttggtctcacactctccatgatttctttatcct 276
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgtcagctgccttggtctcacactctccatgatttctttatcct 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 673
Length adjustment: 9
Effective length of query: 267
Effective length of database: 664
Effective search space: 177288
Effective search space used: 177288
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no215_m17.g1 MSMg01no215_m17.g1 CHROMAT_FILE:
MSMg01no215_m17.g1 PHD_FILE: MSMg01no215_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:33 2005
(604 letters)
>mm_chr15_73408449_73409452
Length = 1004
Score = 1131 bits (585), Expect = 0.0
Identities = 600/605 (99%), Gaps = 2/605 (0%)
Strand = Plus / Minus
Query: 1 cactggtcccaggccacagaattgcacgcaggttactaacggaagggagcccgcttctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cactggtcccaggccacagaattgcacgcaggttactaacggaagggagcccgcttctct 745
Query: 61 ttcccgtgaaagtcaaaacattttttaaagtttgcctgcaagagagtacaagccgttaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcccgtgaaagtcaaaacattttttaaagtttgcctgcaagagagtacaagccgttaag 685
Query: 121 tggtccacagcctgggggcagaatggcatggtggcacttcctggtatctggaaagctagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggtccacagcctgggggcagaatggcatggtggcacttcctggtatctggaaagctagc 625
Query: 181 tatgagacattatctgttcttagcctgaggtctcagctggaatattcacaccgacaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatgagacattatctgttcttagcctgaggtctcagctggaatattcacaccgacaggtg 565
Query: 241 cacagccctcagactcccatccttgagatcctcagggccctgtgagggacggtttggaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacagccctcagactcccatccttgagatcctcagggccctgtgagggacggtttggaca 505
Query: 301 aagttgggagtgacagagcaggatctggatagtagcctcctgcca-cgccccagatgtca 359
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 504 aagttgggagtgacagagcaggatctggatagtagcctcctg-gagtggcccagatgtca 446
Query: 360 tagaaggtgtggtgacccctcccatcagctgcagcctggctgccttatctccctggtacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagaaggtgtggtgacccctcccatcagctgcagcctggctgccttatctccctggtacc 386
Query: 420 actggcttctgcaacccatggggttaatggcttcctttgtctgtggccggtggtctgtgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actggcttctgcaacccatggggttaatggcttcctttgtctgtggccggtggtctgtgc 326
Query: 480 gggagcagcaaccatggctatgtgtgctacaggtcagtatcctaaaacatctactgaaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggagcagcaaccatggctatgtgtgctacaggtcagtatcctaaaacatctactgaaac 266
Query: 540 cggacgctcatcaacctcacatgcaccaaacgccatggccccctagctgtgccacttccc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cggacgctcatcaacctcacatgcaccaaacgccatggccccctagctgtgccacttccc 206
Query: 600 cctga 604
|||||
Sbjct: 205 cctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
