BAC Information

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BAC

Clone NameMSMg01-216F19
Chromosome15 (Build37)
Map Location 46,531,238 - 46,531,420
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039389, EG432951
Downstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216F19.T7 (MSMg01no216_f19.b1)MSMg01-216F19.TJ (MSMg01no216_f19.g1)
ACCAG396264AG396265
length729702
length of high quality
(start - end)
227 (118 - 344)184 (117 - 300)
definitionCHROMAT_FILE: MSMg01no216_f19.b1 PHD_FILE: MSMg01no216_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:20 2005CHROMAT_FILE: MSMg01no216_f19.g1 PHD_FILE: MSMg01no216_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAAGGGGNGGAANNNNNNAA
TTTTCCGAAAAGAGGAATCTCAAAATTCATCTGGAATAACAAAAAACCTA
GATAGTTTTATCCCCAGAATCACCATGCCTGACCTAAAGCTGTACTACAG
AGCAATGATGATAAAAACTGCATGGTACAGGTATAGCAACAGACAAGTAG
ACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGT
CACTTGATCTTTGACAAGGGAGCCAAAACCATCCAGTAGAAAAAGAGACA
GCCTTTTTTTTTATGGTGCTGGCACAACTGGTGGNTATCATGTATTTGNA
TTTTTATCNANNCCCCNNCCCCTCCTTGTACTAAGGTCATATCTAAGTGG
ATTCCCCAACACTCTATTTNACAGAGACGCTGAGGATGGTAGGGGATAAA
GTGGGGAAAAGCCTCAAAAATAAGGGCACAGGGGAAAAATTCCTGAATAG
AACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTTA
TAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAA
AGGCCACCAACAGATTGGGAAAGGATCTTTATCTATCCTAAATCAGATAG
GGGACTAATAATGTGGACTCCAGAAAATCAAATAACCCCATTAACAAATG
GGACTCAGAGCTAAAGAAATAATTCTCAC
CATGCAGTGGTAGGCCTGGCGGCGCCTGGTTCCAAAAAAGGNGAACNANA
GAAGTTCCCAAAAATCTTGATATGTTTCTCTTTTTATTTCCTTATAAGAT
AATATTTTTCCCGGATGATTTGTCCTCTGTAAGTTATCTATGGAGTCTAA
AGCAAAGGACTCCTAATTAACTGTCTCAAATTTAAGTTGACAGGATCAGT
AGATTACTAGACCAAAACATAACACTAATTCAACTTAAAAAAACAGTAAT
AACAAAAATTATTACTACTCCATCATTTTTACTATTCGCTATAAGAGGTT
TTTTTTTATGAGAATACTAAGCTTTTTCTTGGGAATTTAGTGATTCCAGA
GCAANACCTGAAATAAGNTTCAAAAAAAATTGCTCAACAAAAGTCATGTT
AATTTTTCTTGAGAGGAAAATGATTACTAGAATCTGAGGTTTATGAAGAA
TACATGTGGTGACACTGGGGAATGATAGTATTTTTCAGTAGCAGTGCATA
CAACATGGTTGAGCACTACTAATCTAGGTCACAGCTATTTATTACTTTAT
AGAAAGTTGTGATAAAAGTAAAGAAAAATAAACAAAGGGGTTGTTAAAAC
AGCAATATTTTACCTTACTGAAAAAAAGTATATCAAGGGACTTATAAATT
AACCTTCTGTTTTTCATGATGACATGTATGTAAATTAATGCATCTATAGT
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_f19.g1 MSMg01no216_f19.g1 CHROMAT_FILE:
MSMg01no216_f19.g1 PHD_FILE: MSMg01no216_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:20 2005
         (184 letters)



>mm_chr15_46531037_46531622
          Length = 586

 Score =  331 bits (171), Expect = 2e-95
 Identities = 180/183 (98%), Gaps = 2/183 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   atttgtcctctgtaagttatctatgga-gtctaaagcaaaggactcctaattaactgtct 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 384 atttgtcctctgtaagttatctatggatgtctaaagcaaaggactcctaattaactgtca 325

                                                                       
Query: 61  caaatttaagttgacaggatcagtagattactagac-caaaacataacactaattcaact 119
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 caaatttaagttgacaggatcagtagattactagacacaaaacataacactaattcaact 265

                                                                       
Query: 120 taaaaaaacagtaataacaaaaattattactactccatcatttttactattcgctataag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaaaaaacagtaataacaaaaattattactactccatcatttttactattcgctataag 205

              
Query: 180 agg 182
           |||
Sbjct: 204 agg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 586
Length adjustment: 8
Effective length of query: 176
Effective length of database: 578
Effective search space:   101728
Effective search space used:   101728
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)