BAC Information

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BAC

Clone NameMSMg01-231C17
Chromosome15 (Build37)
Map Location 99,719,325 - 99,719,640
singlet/doubletsinglet
Overlap genenone
Upstream geneDhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481
Downstream geneLOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231C17.T7 (MSMg01no231_c17.b1)MSMg01-231C17.TJ (MSMg01no231_c17.g1)
ACCAG398073AG398074
length739763
length of high quality
(start - end)
320 (46 - 365)265 (77 - 341)
definitionCHROMAT_FILE: MSMg01no231_c17.b1 PHD_FILE: MSMg01no231_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:23 2005CHROMAT_FILE: MSMg01no231_c17.g1 PHD_FILE: MSMg01no231_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCATATGTTGAACAATTTGCATTCTTCCCAGATAGCCTAACTAG
AATGGTATGAGTGTATTAAAGATAATTTCTAGAATTAAAGTTATCCCTGT
AGCAAGCACGTGTTTTTTAAGAAGGAATTAGCCAGGTTTTGCTGTTGTTC
CCAGTGTCTTTTGAGACATGGCTTCTGTATGTAGCCCAGGCTGTCCTGGA
GCTCACTACATAGACCAGACCATCCTAATCAGCATAGTGAGTTTGAGGCC
AGCCTGGGCTACAGGAGGACAGGTTCAAAAGGACAGCAAAAAGAATTAGG
CATTCTTTGCTTGTATTTTTATCCCCCCACCCACAGGAATAAAATTACTT
CTCGTGTGGAAACCTTCCCCAACAACTCAGACTATGTTCTATTAAAGAGC
AAAACCATTCGAAAATGTCAAGGCTTGAGAATAAAGTCTGCTCTTTATAA
ACAACAGCCACATAAATACCACAAATCAAGGAGGGGGATTTCCTGACTTC
TGCTTCCAAGCAATTCCAATAAATGAAGGTGGAAGTGATTGTCCTTTGGA
AAAAACTCACTGCTGGCAAGATTAACACACTTCCGGCCACTCTGTTAGGG
TTTTATTCATTATTTATTCAAATTAATGAGAACTAACACATTCCTCTTGC
CCCCACCCCCAGCTTTCCGTCGGGATTTTAAACACTCCC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTAGGCAGAGCTACAGAAAC
CCTGTCTTTTTTAAAAAAAAAAAAAACAACAAAACAAAAACCAAAAAACT
CTAAATTGTCAATCTGGCCGCAATCTCCTGAGCACACATGATCCTCAGCA
TCCTCAGTAGCTGGGGCTACAGCGCAGGGTGAGAGTCAAAGCAGCCAATG
CTTTAGCCATTGAGCCATCGCTCCAGCCCTCAAACTCTGCTCTTATTAGG
GAGTTTTGTTTGTTTATTTGGTTGGTTGGTTGATTGGCTGNNTTNNNNTT
TTTNTTNTTTTTTTTTTTTTTCCCCNNCCCCCCCCCCNNNNNNNNTNTTN
NNNTTTTTTTTTTTTTTGCCCCCCCAAAAAAAAAAAAAAAGGTTGGGGGG
GGTGGGGCGATTCCCTTTTTCCTTCCTTTTCCCGCTTTTCTCTTTTTTAC
TCTATACTACTTTTATCTCAATACAACTTTCCCCCTTTCCTCCTTTTTTC
CCGTTTACCCCTCTTTCTTCTCCTTTGATATCCCTTTTTTTTTCCCTTTT
CCATAACCCTCCCTTATTCAATCTCCCTTTCTTCTTTTTACCTCTTCGCT
CGCCGTTTTTTTTTTCCCTTCTATTCTTCCTTCTTCCTCCATTTTCTTCC
TTCATTTCCCATATATTTCCTTCCTTATCTTACCTTTTACCCTCTCCATT
TTCTCGCCCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_c17.b1 MSMg01no231_c17.b1 CHROMAT_FILE:
MSMg01no231_c17.b1 PHD_FILE: MSMg01no231_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:23 2005
         (320 letters)



>mm_chr15_99719121_99719840
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcatatgttgaacaatttgcattcttcccagatagcctaactagaatggtatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcatatgttgaacaatttgcattcttcccagatagcctaactagaatggtatg 264

                                                                       
Query: 65  agtgtattaaagataatttctagaattaaagttatccctgtagcaagcacgtgtttttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgtattaaagataatttctagaattaaagttatccctgtagcaagcacgtgtttttta 324

                                                                       
Query: 125 agaaggaattagccaggttttgctgttgttcccagtgtcttttgagacatggcttctgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaggaattagccaggttttgctgttgttcccagtgtcttttgagacatggcttctgta 384

                                                                       
Query: 185 tgtagcccaggctgtcctggagctcactacatagaccagaccatcctaatcagcatagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtagcccaggctgtcctggagctcactacatagaccagaccatcctaatcagcatagtg 444

                                                                       
Query: 245 agtttgaggccagcctgggctacaggaggacaggttcaaaaggacagcaaaaagaattag 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 agtttgaggccagcctgggctacaggaggacaggctcaaaaggacagcaaaaagaattag 504

                           
Query: 305 gcattctttgcttgta 320
           ||||||||||||||||
Sbjct: 505 gcattctttgcttgta 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)