BAC Information

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BAC

Clone NameMSMg01-232C23
Chromosome15 (Build37)
Map Location 78,173,933 - 78,174,156
singlet/doubletsinglet
Overlap geneCsf2rb1
Upstream geneLOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2
Downstream gene1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232C23.T7 (MSMg01no232_c23.b1)MSMg01-232C23.TJ (MSMg01no232_c23.g1)
ACCAG398772AG398773
length759720
length of high quality
(start - end)
224 (440 - 663)---
definitionCHROMAT_FILE: MSMg01no232_c23.b1 PHD_FILE: MSMg01no232_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:37 2005CHROMAT_FILE: MSMg01no232_c23.g1 PHD_FILE: MSMg01no232_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGACCTACAGAGAGAAACTGTCTTGAAAAATCAACTAGCCAACCA
ACCAACCAACCAACCAACCAACCAATCCACCAACCAACCAACCAACCAAC
CAACCAATCAACAACCAAGCAATCAATCAAGCAAGCAAGTAACGAAAGAC
ATGAACTCTCAGCCCTTTCTCCAGCTTCCTGCCCCTGTTCCCTGCTGTGA
CTGCTCTGCACCATGATCTCTCACCCACTGGAACCCTAATCCCAAAGTAA
ACACTCTTCTATGAGTTACCTCGGTAATGATGGTAAAAAAGTAACCAAGG
CAAATGCCCATCATTTTTTTATCACACCCCCACCCCATGTTGGGCCATGA
GGGAGGGGAGCACCTGAACCAAGCCACAAAGAACCAAGCTTGTTGGTGAT
TCCCTGCTAGTGTTTAAATACAAAAATAAAAAATAAAAACAGAAAGAGCC
CATGGCTTTCTACCCTGGTCCATTGACTATTCCAGCCCTGGGCAACACAC
TCAGTTTGTGGGAACTCCCGCACTCCATCCTCCCCTTCCCCCTGTGAGGT
CCCTTCATTTCCATTTTACACAGGGAAAACTGAGTCTGGAGAAGATAAAA
CTGGGCAGTGGAGAGCCCTGTCTCTATTTCTCTGTCTTAGCTGCTCCCCT
CTGCTGCTTCAGTGACTCTGGGAGTTGCCTGACATCAGCACGGGCTGGCA
AGCCCTTGC
GGGGGCGCCGGGCTTCGAANGNGANGAANANAGAAGGTTTCCCAAAGAAA
GGGGNNGANNAGGGNANANNNGGGNNNGAGNGAANNATTTTTTCCAAAAA
GGAGGGGGNGNNNNAGNNNNANAAAAAGGGGGGAAAAGAAAAANNANAAN
ANAGGNNNGGAGGGGGNAGGGGGGNAGNAGAGAGAGGGGNGGGGGANANA
NNAAGNGANAGAAGAAGGTTTTTTGAGGGAANANGNGNAAGAAGGGAAGG
ANNNNNAAGGANAAAGAAGAAAGAAAGGANAAGATGTTGTGGTTTGAAAA
GNNNAGAGAAGANGAAAGGGGATTTTTTTTTTTCCCCCCCCCCCCCCCNC
CNAAGGGGGAGAAGNANNAGGNAGGGCGGGACCAGGAAAAAAAGAGNNNA
AAGAGCGGGGGGGCGGGGCANGGAGCCAACAACGGACGAGGNCAANAAGG
CNAACCACGGGCCTGGGCTCGGACCCAGGGACGCAGGGAAAAGAGCTCCG
ACCCCAGAAGCCCCGGCAGCGCAAACAACCCAGACCGACACAGGAGGCCG
CTATCCCTGGCCACTAATGAGGAGAATTTGCTGATCTCTCACTTGGATGA
CAAAGAACCTGATTTAAAGCGTGCCTTTTTTTTTTTTGTTTATGGAACGT
AATATGCACCCATCGTAAATGGGCTAGATGAGCGATTTTTCCCTGTAGTT
AGCTTTCTCGAACACTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_c23.b1 MSMg01no232_c23.b1 CHROMAT_FILE:
MSMg01no232_c23.b1 PHD_FILE: MSMg01no232_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:37 2005
         (224 letters)



>mm_chr15_78173733_78174356
          Length = 624

 Score =  433 bits (224), Expect = e-126
 Identities = 224/224 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttggtgattccctgctagtgtttaaatacaaaaataaaaaataaaaacagaaagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttgttggtgattccctgctagtgtttaaatacaaaaataaaaaataaaaacagaaagagc 365

                                                                       
Query: 61  ccatggctttctaccctggtccattgactattccagccctgggcaacacactcagtttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccatggctttctaccctggtccattgactattccagccctgggcaacacactcagtttgt 305

                                                                       
Query: 121 gggaactcccgcactccatcctccccttccccctgtgaggtcccttcatttccattttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggaactcccgcactccatcctccccttccccctgtgaggtcccttcatttccattttac 245

                                                       
Query: 181 acagggaaaactgagtctggagaagataaaactgggcagtggag 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acagggaaaactgagtctggagaagataaaactgggcagtggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)