BAC Information

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BAC

Clone NameMSMg01-233B10
Chromosome15 (Build37)
Map Location 39,726,896 - 39,793,331
singlet/doubletdoublet
Overlap geneLrp12
Upstream geneBaalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys
Downstream geneLOC100039130, LOC670013, LOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233B10.T7 (MSMg01no233_b10.b1)MSMg01-233B10.TJ (MSMg01no233_b10.g1)
ACCAG399396AG399397
length721700
length of high quality
(start - end)
322 (45 - 366)282 (86 - 367)
definitionCHROMAT_FILE: MSMg01no233_b10.b1 PHD_FILE: MSMg01no233_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:44 2005CHROMAT_FILE: MSMg01no233_b10.g1 PHD_FILE: MSMg01no233_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,726,896 - 39,727,213)(39,793,050 - 39,793,331)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAAATTAATATTTCATCAGTGAAACTGTAAAAACTACATTATAGT
GTTTAAAATTAAAGCAATAGCTAAAAACAAACCATTTCACCACAATGCTA
TATACATCACAAATTGTTAACTCTTGCATAAGTAAAGCAACTGCAATTCA
GACAGCAGTAAGTCCCCCCACCCCCACCCCTGTAAGGAAGTCCCCCACCT
GCCTTTCTTAAGGCTACAACTGAACCCTCAGTTGTAAATGGCTCTGGGGA
TGAGCAGGGTGCTGGGTCTCTAAGTATCAGAATAGGCAGCTATAAAATGC
AAACACAGAAAGGTGACAAAGGAAGGCCATTCTGAAAGAGTCAATTCTGA
CAAGTAGAAAATAATGCTTGACAACCGTCTCAGGTCCACACTTTGCTAAG
TTAATTAATATTAGCAAGAAGTAAAGAATTTTGACGGCAATTTTTTTTTC
TTAGCTCTCTATGCTCACTCTGCCTGATAAAAGATTCCACATCAAATGTA
GAATAGATTCCAGACAAACTAACCTCATTTAGCGCATTCAACTATTGATA
TTAAAAGGGAGGAACACAGAGCTGTCTCACTGTTGAATGAGTATGACATG
CCAGTCCTAACATTAAAATAAAATGTAAAACAAACAAAATTTTCCAGGTG
AGAAAGGATTAAGCCCCCAAA
CCCAAAAAACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACACTCATCTTCT
CTACACTCTGACTTGGGGTATAATATCTCATGAACGGCTTAATCAACCCC
CTAAATATTATTTCTCCTCCAATTGCTAAGTACTCAGAATAGATACATTT
TAACAGTTTTCCCACTAACGTACTGATGCAATTATAGGTATGCTGTATCC
CCCATATATGTACACAAACAGAACACATTAAATATATTGTATAGGCTGAA
GAGATGTCTCAGCACCTAAGAGAACTGGCTGCTATCACAGTGGACTTGGT
TTTAACTCTTAGCATCTATATGGTCACTCCCAACTGTTCTAGTTATGGGG
ATTCAGGGGATCCAACACCTACTTCTGGCCTCTACAAACACAAAATTCAC
ACATAGTGCACATATATCCATGCAGGCAAATATATAAGATGAAAACAAAT
AAATTTTTAAATGTATTTATTAGTGCATTCACTAAAACAAATAAGTATAT
TTACAGAATGTTCTAATTATGGTTTATTGCTATGAAGAGACACCATGATC
ATGGCAACATTTATAAAGGAAAATATTTAATTGGGGCTTGCTTACAGTTC
AGATGTTTAGTCCATTATCATCATGGTAGGAAGCATGGTGGTGTATAGGN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_b10.b1 MSMg01no233_b10.b1 CHROMAT_FILE:
MSMg01no233_b10.b1 PHD_FILE: MSMg01no233_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:44 2005
         (322 letters)



>mm_chr15_39726692_39727413
          Length = 722

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaaattaatatttcatcagtgaaactgtaaaaactacattatagtgtttaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaaattaatatttcatcagtgaaactgtaaaaactacattatagtgtttaaaa 264

                                                                       
Query: 65  ttaaagcaatagctaaaaacaaaccatttcaccacaatgctatatacatcacaaattgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaaagcaatagctaaaaacaaaccatttcaccacaatgctatatacatcacaaattgtt 324

                                                                       
Query: 125 aactcttgcataagtaaagcaactgcaattcagacagcagtaagtccccccacccccacc 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 aactcttgcataagtaaagcaactgcaattcagacagcagtaagcccccccacccccacc 384

                                                                       
Query: 185 cctgtaaggaagtcccccacctgcctttcttaaggctacaactgaaccctcagttgtaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgtaaggaagtcccccacctgcctttcttaaggctacaactgaaccctcagttgtaaa 444

                                                                       
Query: 245 tggctctggggatgagcagggtgctgggtctctaagtatcagaataggcagctataaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggctctggggatgagcagggtgctgggtctctaagtatcagaataggcagctataaaat 504

                             
Query: 305 gcaaacacagaaaggtga 322
           ||||||||||||||||||
Sbjct: 505 gcaaacacagaaaggtga 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no233_b10.g1 MSMg01no233_b10.g1 CHROMAT_FILE:
MSMg01no233_b10.g1 PHD_FILE: MSMg01no233_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:44 2005
         (282 letters)



>mm_chr15_39792924_39793605
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacactcatcttctctacactctgacttggggtataatatctcatgaacggcttaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 caacactcatcttctctacactctgacttggggtataatatctcatgaacggcttaatca 349

                                                                       
Query: 61  accccctaaatattatttctcctccaattgctaagtactcagaatagatacattttaaca 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 actccctaaatattatttctcctccaattgctaagtactcagaatagatacattttaaca 289

                                                                       
Query: 121 gttttcccactaacgtactgatgcaattataggtatgctgtatcccccatatatgtacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gttttcccactaacgtactgatgcaattataggtatgctgtatcccccatatatgtacac 229

                                                                       
Query: 181 aaacagaacacattaaatatattgtataggctgaagagatgtctcagcacctaagagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aaacagaacacattaaatatattgtataggctgaagagatgtctcagcacctaagagaac 169

                                                     
Query: 241 tggctgctatcacagtggacttggttttaactcttagcatct 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tggctgctatcacagtggacttggttttaactcttagcatct 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)