CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGAAGTTTCCATCTTCATTGTCTATTGCCAATATACAGCCATTC
TCATAAGGAAGGCAATGTCTATCAATTCTAGAAAGAGAATATTATGAACA
AACATCTGAGGAAAAACTAGTGGTACTGATATAGGATGAGATGATAATTT
TGTATCTGTTCAATACCTTCTTTTTTTTCTGTTTTCATGCGTGGTAAAGA
TCAAATATCTTACAAAATTTTCTATTATTTTTATATATACCTCTCATTTA
ATAAATTTATAACATCTATTTAGCTTTTACAAAACACCTGTATTGAATAT
TTAATATGAAATATTGTATAATGTAACAGCATTTAAAATATCTTTTTAAT
TAGTTTTAGAAATTGTGGTAAAAATCTATTTCCCTCTCCTTCACAAACAC
ATCTTCCTCTATACTCTTAAATCTTATATGTACAACACTGGAAAAATTGC
AGGACAGCATTACTACCAAACAATATTTTTCATTCTGAATTAGTAATTAT
TTTTCAAATTATCTCTAACATATTTGAGACATAATACATGGGTATGATCA
CAGCATTTGGAAGGTAGATACAGAGGGATTTATAACTCGAAGCATCATTA
TCTTCAGAGATACTTGTAAGCTGTGACTGTATATATGTATATAAATGTGT
GTCACTAACATCGGACTCAAT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAACTGAGGAATAACAAAGGGCG
GAGAAGCACTTGAAAAAATGTTCAACATCCTTCATCATCAGGGAAATGAA
AATCAAAACAACCCTGAGATTCCACCTCACACCATTCAGAACGACTAGAA
TCAAAAAGTTAGGTGACAGCAGATGCTAGCAAGGATGTGGAGAAAGAGGA
GCACTCCTCCATTGCTGGAGGAATTGCATGCTGGTACAACCACTCTGGAA
ATCAGTCTGGAGGTTCCTCAGAAAACTGGATATAGTATTACTGCTAGATC
CAGCAATACCTCTTCTGGGCCCACCCCCCACCCAGGTTCCAACTGGTAAT
AAGGACACATGCTCCACTATGTTCACAGAAGCCTTATTTATAATAGCCGA
AAGCTGGAAAGAATGCAGATGTCCCTCAAGAGAGGAGTGGATACAGAAAA
TGTGGTACATTTACACAATGGACTACTACTCGGCTATTAAAAACAATGAA
TTTATGAAATTCTTGGGCAAATGGATGTATCTGAAGGATAACATCCTGAG
TGAGGTAACCCAATAACAAAAGAAGTCACTTGATATGCACTTACCTATAA
GTGGATATAAGCCCAGTAACATAGAATACCCAAGATACAACTTCCAAAAT
ACAAGATAAACAAGAAG

Query= MSMg01no234_a15.b1 MSMg01no234_a15.b1 CHROMAT_FILE:
MSMg01no234_a15.b1 PHD_FILE: MSMg01no234_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:53 2005
         (596 letters)



>mm_chr15_20017627_20018625
          Length = 999

 Score = 1116 bits (577), Expect = 0.0
 Identities = 593/599 (98%), Gaps = 3/599 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctagaaagagaatattatgaacaaacatctgaggaaaaactagtggtactgatatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttctagaaagagaatattatgaacaaacatctgaggaaaaactagtggtactgatatagg 740

                                                                       
Query: 61  atgagatgataattttgtatctgttcaataccttcttttttttctgttttcatgcgtggt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 739 atgagatgataattttgtatctgttcaatactttcttttttttctgttttcatgcgtggt 680

                                                                       
Query: 121 aaagatcaaatatcttacaaaattttctattatttttatatatacctctcatttaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaagatcaaatatcttacaaaattttctattatttttatatatacctctcatttaataaa 620

                                                                       
Query: 181 tttataacatctatttagcttttacaaaacacctgtattgaata-tttaatatgaaatat 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 619 tttataacatctatttagcttttacaaaacacctgtattgaatattttaatatgaaatat 560

                                                                       
Query: 240 tgtataatgtaacagcatttaaaatatctttttaattagttttagaaattgtggtaaaaa 299
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 559 tgtataatgtaacagcatttaaaatatctttttaattagtttttgaaattgtggtaaaaa 500

                                                                       
Query: 300 tctatttccctctccttcacaaacacatcttcctctatactcttaaatcttatatgtaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctatttccctctccttcacaaacacatcttcctctatactcttaaatcttatatgtaca 440

                                                                       
Query: 360 acactggaaaaattgcaggacagcattactaccaaacaatatttttcattctgaattagt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acactggaaaaattgcaggacagcattactaccaaacaatatttttcattctgaattagt 380

                                                                       
Query: 420 aattatttttcaaattatctctaacatatttgagacataatacatgggtatgatcacagc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aattatttttcaaattatctctaacatatttgagacataatacatgggtatgatcacagc 320

                                                                       
Query: 480 atttggaaggtagatacagagggatttataactcgaagcatcattatcttcagagatact 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atttggaaggtagatacagagggatttataactcgaagcatcattatcttcagagatact 260

                                                                      
Query: 540 tgtaagctgtgactgtatatatgtatataaa--tgtgtgtcactaacatcggactcaat 596
           |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||
Sbjct: 259 tgtaagctgtgactgtatatatgtatataaatgtgtgtgtcactaacatccgactcaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 999
Length adjustment: 10
Effective length of query: 586
Effective length of database: 989
Effective search space:   579554
Effective search space used:   579554
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)