BAC Information

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BAC

Clone NameMSMg01-234B03
Chromosome15 (Build37)
Map Location 18,321,090 - 18,321,755
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162, LOC666835
Downstream geneLOC666839, Cdh10, EG666857
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234B03.T7 (MSMg01no234_b03.b1)MSMg01-234B03.TJ (MSMg01no234_b03.g1)
ACCAG400075AG400076
length1,313744
length of high quality
(start - end)		---667 (76 - 742)
definitionCHROMAT_FILE: MSMg01no234_b03.b1 PHD_FILE: MSMg01no234_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:55 2005CHROMAT_FILE: MSMg01no234_b03.g1 PHD_FILE: MSMg01no234_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAATAAANNTATTTANAATTNNNNNNTAATAATTAACTTATTTGCTCT
AAATTACGCAATCAGCTTCCTTTATATGAGGGTCGGCCACGACAAGTGAA
TACTACAATCAGAGATCGATGGCACTGCGTCGCCATTACCTCATACGTTG
TATACATCTCCACCTGGCGTAACACATGGATGTAGTAGAAACCGCCGATA
CGAGGAGGCGCCTACTAGCCCGCGCGATTTGAGAATAAGTATGAAGAAAC
AGAGCTGATCTTAGGTGGGAGACTATGGAGAGCAGGTGCGGACACGTCTT
AGGGAACGCCGCCCCTACTCCAGCGCTACAGAACCATTGTCTGTCTCACG
ACACGCACGGGGTACTTCGTGTGGTTATGCTTTCTGCTCTTATATCCATT
TTCACCGTAGCAATCCATGTGTGTTGCTTCGTTTTGTGGTGGATACCGTC
CCTGCACACTACTCAGCTACGAGCGCACCGCTCCGAGCTCTCCTCCAATC
CCTATCACTTCTCCTCCCTTCACTCCCATTTCCACTCATCCCTTCTCTCT
TCCTAACACTCTTCTCACTCCCTCTTCAACTCTACTACTTTTATTCACTT
CCTTCTTTGATTACTGCCTCTCCTCCTTATCTCTCTATATATATTTGATT
CGTCCAGTCAGGTATCGCCTCTAACTCTCGTAATGTTTCTCCGTCTCGCG
TTACAATTAGCAGCGTAGAGTCAAGCGTCCTGCGTCAGGGTGTCGATGTC
TTGCACTCACTCACGATGTGAACGACGAGCTTGTTTGCCGTACGTGACAC
ATCCTCTTCGTACTTTTCACGACGCAGTGAACTGATCGATGTTCCTGATT
TGGTATCGGGCTCTCGCTTATCTCATACCTGTGATGCTCAGTATCTCTGT
TGACGGCGTGGCTCCCACTCCGCTCTGTGTTTACCTGTTGATCGCGTATA
TCTATACTGCGCCCGTCGGCAGCATAGTAGTTGCGTGTCGCGAACCACAC
GACGCCCGTAGCACTTCCTAGCTCCTTTTTACTCTTCACTCTCAATCACA
TAGTCCAGCGGGACCTCTATCACCCACACTGCGCCACACACGCGGAGAAC
CGCGCACTGACAACCAATCACGATCGCATGCGTGTATATCGACAACCTGC
GGCGCTGCTTGGCTCTGCTGACGGTCCACGGTTGCATCCACTCATCCGTC
ATGCGCGCACCAGACTGCACGCGATTGATACACTATCACCCGTGTATGTT
TGTTACGAAGCACTGATCAATAGCGCGTATGCGAAAGATCGCCGTGGCTA
TGATGTAGGAATG

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTCAAAGGGCTAGCGTCCATG
ATGGCAAAGCAAATCATGAGTATAGAAACACTGACAATTCATCTCTTGAT
CCACAAACATGGGAATATAGAAAACACTGGAATGGCACAAGTTTTTTGAA
ACCTCAAAGCAGTATTACACCCTAGATTTTTGCCTTCTATGTAGAGCATA
TACCTTGTAATCATTCTGAAATAGTTCCATAAAATGTTAACCATTAATTC
ACAATTGTGCTGCATTGTCATTCAAACAATCAAAGACAGATAACCCCATA
TTTACAATATCTTGAGGTATAGAAATTTTTAATTTTAGATGATATAAGTA
CATGTAAAAATTTGACTACTAAATTTATTTCATATGTAGAGCAATCACTA
AAATAGTAATCTTTGACAAGAAGAGTAAGCTTTGGCTCCCAAGTGGCCAC
ATAATCCTTAGAGGAAATAAAGGGTATAGTCTGGTGCACATGTATTAGCA
GGATTTGATGATCAGCAGGGTATTTAGTTTTCATTTACAATGTGTTCACA
TTGAAGATAAGTACATAATGAGTCAACTAGTATCTGCCTTTATTTCTTCT
CACTAGAACGCACAGCATCTCAATGGTGATAACACAAAGCAATAAAGGAA
ATAATTTGGCCAGTTTGAAATAAAATAGTTTGCAACTCTTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_b03.g1 MSMg01no234_b03.g1 CHROMAT_FILE:
MSMg01no234_b03.g1 PHD_FILE: MSMg01no234_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:55 2005
         (667 letters)



>mm_chr15_18320889_18321955
          Length = 1067

 Score = 1243 bits (643), Expect = 0.0
 Identities = 661/667 (99%), Gaps = 1/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggttcaaagggctagcgtccatgatggcaaagcaaatcatgagtatagaaacactgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 202 caggttcaaagggctagcgtccatgatggcaaagcaaatcatgagtagagaaa-actgac 260

                                                                       
Query: 61  aattcatctcttgatccacaaacatgggaatatagaaaacactggaatggcacaagtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcatctcttgatccacaaacatgggaatatagaaaacactggaatggcacaagtttt 320

                                                                       
Query: 121 ttgaaacctcaaagcagtattacaccctagatttttgccttctatgtagagcatatacct 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttgaaacctcaaagcagtattacaccctagattcttgccttctatgtagagcatatacct 380

                                                                       
Query: 181 tgtaatcattctgaaatagttccataaaatgttaaccattaattcacaattgtgctgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaatcattctgaaatagttccataaaatgttaaccattaattcacaattgtgctgcat 440

                                                                       
Query: 241 tgtcattcaaacaatcaaagacagataaccccatatttacaatatcttgaggtatagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcattcaaacaatcaaagacagataaccccatatttacaatatcttgaggtatagaaa 500

                                                                       
Query: 301 tttttaattttagatgatataagtacatgtaaaaatttgactactaaatttatttcatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttaattttagatgatataagtacatgtaaaaatttgactactaaatttatttcatat 560

                                                                       
Query: 361 gtagagcaatcactaaaatagtaatctttgacaagaagagtaagctttggctcccaagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagagcaatcactaaaatagtaatctttgacaagaagagtaagctttggctcccaagtg 620

                                                                       
Query: 421 gccacataatccttagaggaaataaagggtatagtctggtgcacatgtattagcaggatt 480
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 gccacataatccttagagaaaataaagggtatagtcttgtgcacatgtattagcaggatt 680

                                                                       
Query: 481 tgatgatcagcagggtatttagttttcatttacaatgtgttcacattgaagataagtaca 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 tgatgatcagcagggtatttagttttcatttacaatgtgttcacattgaagataagcaca 740

                                                                       
Query: 541 taatgagtcaactagtatctgcctttatttcttctcactagaacgcacagcatctcaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatgagtcaactagtatctgcctttatttcttctcactagaacgcacagcatctcaatg 800

                                                                       
Query: 601 gtgataacacaaagcaataaaggaaataatttggccagtttgaaataaaatagtttgcaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgataacacaaagcaataaaggaaataatttggccagtttgaaataaaatagtttgcaa 860

                  
Query: 661 ctcttag 667
           |||||||
Sbjct: 861 ctcttag 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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