BAC Information

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BAC

Clone NameMSMg01-234C03
Chromosome15 (Build37)
Map Location 51,988,432 - 51,988,786
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720
Downstream geneLOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745, Ext1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234C03.T7 (MSMg01no234_c03.b1)MSMg01-234C03.TJ (MSMg01no234_c03.g1)
ACCAG400116AG400117
length743736
length of high quality
(start - end)
376 (48 - 423)42 (74 - 115)
definitionCHROMAT_FILE: MSMg01no234_c03.b1 PHD_FILE: MSMg01no234_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:01 2005CHROMAT_FILE: MSMg01no234_c03.g1 PHD_FILE: MSMg01no234_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGATCCGCGGA
ATTCCTTCTTCTTTTCCACCAATTCAACTGGACCACCCCGCCATACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
TGCTGCCAAGAGCCTCGGAAGCCTTTACATTATTTATTTTTCTGTGGATC
CATTGTGTTTTAGGAGGCTCAGAAGAAGCCAATTGCATGGTTTCAGGGCA
ATAAAACAGTCACAGCAAGTGGCTCACTGTTCAGTTTGGCGCTGTGGAAC
CTGGCACGAGTCCTCACATTCCTCTCTCTGAGGCTGGAAAATGCTCAAGC
CTGGCCCTCAGTCTATGCCACCCGGGTCCTTTGGTGACCACATGAGACAA
AGCCTTGAAGCAGAAATTTAGCACCATGTGTCAGCGAGTCCCGACTCCCA
TGTGCACATAAGTCTCCTTCAGGCATGAGTGGGTCTTTCTAAATGCAGAC
TCCGGTACGCATGTCTACTTATGTACAACCTAAAAGTCTGCATTTCTGAC
CCACTACCAGATCGTCCATTCTCATACTGCGGATCAACTATTCTTTGGCG
TCAATTATTTCCCTCTCTGTTACTCTCTTACCCCTATGATCCCGCAATTC
ACATATTTTCTTTCCCTATCCTTTTATACTCGCCTTTTTTACACCTTATT
CACCTCACCGATCCAACTTATTTTTCTGTTTTGCCCTTCCACN
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATGGGTAGGATTGGAACTATGGCTAG
CGGAAGGAGCTGGGGCATGTTTCCTTGCTACCCCAGACTTCATTGAAGCT
GCGCGTGTGGGAGGCATCAAAGGTCTGGTCTAGTGAGGAATCTCTAGTAA
AGATCTCCTACCCATGTTCCCCACCCTGTTGTCCTCGAGTGTTGGGTAGC
CAAATTCCTCATTCCTTACGCAATTGATATTTGCCTCCTCTTATTATCAT
AGTCCGACAGAATCCAGTGTCTGTTTCTCCTACCTTCCCATCCAGACCTT
GCTTCCCCTGATTTGTTAATCCCCCCCACAACCCCCATTCCTTGTGTGTT
ACACATGCTCCTCCTGATCTCCCCCACCATAAAAAACAATCCTCGGATTA
CGCTGGATTTCCCGACCACAGGAATTTTATTCTTGCCCCTACCAGGGCTT
TGGGATCTAAGGCAACCTGGCGGTACCCCCCTTGGTAGTTTCTCTTTTGC
ATCACTCCCCTTTCTTGCTTTTTTTCTGCCCCCCGTTGTACCAGATTTCC
TTGATTCCGACTACCCTCTTCCTGTAATCTACCACTCAATACTGTATCCT
TTCTCTTCCCCTTTTTTCTCCCCACCCATTTATTCCCATTATAACTTTCC
AATGCCTTTACCCTCCAGTCTCCCTTTATTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_c03.b1 MSMg01no234_c03.b1 CHROMAT_FILE:
MSMg01no234_c03.b1 PHD_FILE: MSMg01no234_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:01 2005
         (376 letters)



>mm_chr15_51988129_51988904
          Length = 776

 Score =  590 bits (305), Expect = e-173
 Identities = 349/377 (92%), Gaps = 24/377 (6%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattccttcttcttttcca--ccaattcaactggaccaccccgccatacacacacacac 59
           ||||||||||||| ||  ||  ||||||||||||||||||    ||||            
Sbjct: 658 gaattccttcttcctt--caccccaattcaactggaccac----ccat------------ 617

                                                                       
Query: 60  acacacacacacacacacacacacacacacacacacacacacactgctgccaagagcctc 119
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ----acacacacacacacacacacacacacacacacacacacactgctgccaagagcctc 561

                                                                       
Query: 120 ggaagcctttacattatttatttttctgtggatccattgtgttttaggaggctcagaaga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaagcctttacattatttatttttctgtggatccattgtgttttaggaggctcagaaga 501

                                                                       
Query: 180 agccaattgcatggtttcagggcaataaaacagtcacagcaagtggctcactgttcagtt 239
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 agccaattgcatggtttcagggcaataaaacagtcagagcaagtggctcactgttcagtt 441

                                                                       
Query: 240 tggcgctgtggaacctggcacgagtcctcacattcctctctctgaggctggaaaatgctc 299
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggcactgtggaacctggcacgagtcctcacattcctctctctgaggctggaaaatgctc 381

                                                                       
Query: 300 aagcctggccctcagtctatgccacccgggtcctttggtgaccacatgagacaaagcctt 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 aagcctggccctcagtctatgccacccgggtcctttggtgactacatgagacaaagcctt 321

                            
Query: 360 gaagcagaaatttagca 376
           |||||||||||||||||
Sbjct: 320 gaagcagaaatttagca 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)