BAC Information

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BAC

Clone NameMSMg01-234P10
Chromosome15 (Build37)
Map Location 6,195,771 - 6,196,002
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
Downstream geneDab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr, Lifr, Egflam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234P10.T7 (MSMg01no234_p10.b1)MSMg01-234P10.TJ (MSMg01no234_p10.g1)
ACCAG400688AG400689
length754743
length of high quality
(start - end)
---232 (132 - 363)
definitionCHROMAT_FILE: MSMg01no234_p10.b1 PHD_FILE: MSMg01no234_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:08 2005CHROMAT_FILE: MSMg01no234_p10.g1 PHD_FILE: MSMg01no234_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCCTATATTCAGAGAATCCGCGGAATTCTCAAGGTTTTGCCAAAAACA
AACTGTGTATAAGGAGGGTGACACGTGTTATGGCATGTGACGCTTTTTCC
CCCCCAAAATGAGGCAGTTCAGTTCACCTCTTCCTAAACTCTCAGCTCTA
CTCTGCTTATGATTGAATGTTGCTTGAACTGTGCTCCATAAGTTTAGGAC
AACTGTTTAACAATCAAGTGTATACAAGGATGTGGAGATATATTCTTCTA
TCATTCACGATGAATAGAGATGATTTCATATTACACATGGGTGAGAGAGA
GGGAAAAATGATCATTTTTTTTCTTTATTTAGGAATGCAATATAATAGAC
TTGTGTATTATTTTTTTTTTCCCGTNGACAGTGCCACGAATAAGAAGTTG
AGATGATTATGAGTAGCCTTCCATCGCAAGATAAAAATAAAATATGCTCG
GGGGGGTAGAGGACAATGTTAAATTGAACCTATGGATTGATACAAAAGAA
ATGAATTGTTGAACCAATCGGAGATCACATGATAATTATAGTTAAGGAAT
TTCACATTGTCCTCATAGAAAGAATTTTAACAGGAGCTACCAGGACTTAC
TTTAGTACTAGAGACGATAAGATATCAGAAGTTGCAGTATGATGATGTAG
CTACTGGGTGTGAAGAAAAGTGTTATAATCATATTAAAAAGATACTACAA
AAGTCATCCAATTAGACGGGTGCTGCCTCCATGATGTGCCCATGGCACAG
GAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCAGAAATTCTTTAAAATGGCAAAGAGGCTAGAGCTT
GAGACTGTAGAGTAAGTGTTCACCCAGATGGGAAATTCAGGACTGACCGG
AGTCTCTGAATGCAAAGCAGAAAAGACTTTCAGATGGCAAACAATGCCGC
TATAATGACAGTTCAAAAATGAAGGCTTGAAAGAGATACTGTGATAAAAA
GTATAGTAAGCCAACTGTACAAGTTTTTAAAAAATGTTTTACTAGTGGAA
TTTATAGACAATGTCCTCAGATCTCTTACAAACCTAGGTTTTTACCATCA
AGTTCTCCTCAGATTATTCTCACTTCTCTCTGCAGTCCAAACAATAAATT
CTCACCAAAGGGGATGGTGGTGGTGGTGGGGACTTGCTAGTAGCTCGCTA
GGTATGTATCCCATGATCATTTGACATGAGTCAAATCACTTGATGAGCTT
GAAGGACTGCAGTTCAGTGTATGTGGTTGAAGCAGAGCGGATGCAAGACA
TGGCTAGGAGAGACCGGGTCCTAAGATATGCCTGGGTGAGTAGAACCCAC
TTAACTTAAGAGAACGCATTAGGGGACTGAGCATAGGAGAACTAGGGGAT
TTGGGTCTGACATATACTTTAACAGAAGTACTCTAGAAGCTTTCCTGAGG
ATAAAGTATGGGAACAGGGTATAAGTACGCTCTGGAAGATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_p10.g1 MSMg01no234_p10.g1 CHROMAT_FILE:
MSMg01no234_p10.g1 PHD_FILE: MSMg01no234_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:08 2005
         (232 letters)



>mm_chr15_6195568_6196202
          Length = 635

 Score =  371 bits (192), Expect = e-107
 Identities = 221/232 (95%), Gaps = 3/232 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   attcaggactgaccggagtctctgaatgcaaagcagaaaagactttcagatggcaaacaa 63
           ||||||||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 435 attcaggacagacaggagtctctgaatgcaaagcagaaaagactctcagacggcaaacaa 376

                                                                       
Query: 64  tgccgctataatgacagttcaaaaatgaaggcttgaaagagatactgtgataaaaagtat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgccgctataatgacagttcaaaaatgaaggcttgaaagagatactgtgataaaaagtat 316

                                                                       
Query: 124 agtaagccaactgtacaagtttttaaaaaatgttttactagtggaatttatagacaatgt 183
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 315 agtaagccaactgtacaagtttttaaaaaatgttttactagaggaatttatagacaatgt 256

                                                               
Query: 184 cctcagatctcttacaaacctaggtttttaccatcaa---gttctcctcaga 232
           ||||||||| |  ||||||||||||||||||||||||   ||||||||||||
Sbjct: 255 cctcagatcacaaacaaacctaggtttttaccatcaacaagttctcctcaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 635
Length adjustment: 9
Effective length of query: 223
Effective length of database: 626
Effective search space:   139598
Effective search space used:   139598
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)