BAC Information

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BAC

Clone NameMSMg01-235G16
Chromosome15 (Build37)
Map Location 99,945,640 - 99,945,906
singlet/doubletsinglet
Overlap genenone
Upstream geneSpats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik
Downstream geneDip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235G16.T7 (MSMg01no235_g16.b1)MSMg01-235G16.TJ (MSMg01no235_g16.g1)
ACCAG400997AG400998
length749739
length of high quality
(start - end)
270 (45 - 314)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no235_g16.b1 PHD_FILE: MSMg01no235_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:44 2005CHROMAT_FILE: MSMg01no235_g16.g1 PHD_FILE: MSMg01no235_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCATATATGTTCTCCTTATTCAGTTGCTTGTACTACTCACACACAT
GGCTGCTCTCTTCTCCAAGCTTAAGCAAAGCACAAATGAAGTGCACACCT
GTATGTGCCACACTGATAAAGCAATGGCCAGGACTACGGTAATGGGGAGG
GGTAGGTAGAGAGAGCACTGATTGGGAGCGGTGCTGCGCAGGCCTCAAAG
GCACTCAAGGGAGTGTATGTGCTTCCAAGGCGTGGCAAGAAATATGGGGA
GTGAGATGCGCATATCTTGAGAGCATTTTTCTAAAAAATAAGTAAGTAAA
TAATATAAATAANTTCCCGAATCAGAGCACACTTCACTTAAAATGAAGTT
TTACATATAATTCACCGCAAGAAAAAAAAAAAGGTTTTAAATAACATAAA
AGATAATTTAAATATACAACTTTCCAGTAATTTTTTTAATGATTTAATTG
TTTGTTTGTTTTTGTGTACCTTTTCCCCCTTATCTTATCACTCATTCTAT
CCTACATTTGTCTCTCTTCCATTTCTTTTTTTCCACTCTTATCTCACATT
TTTTTTTTATACCCTTTTTTTTCATTTTATTCTTTTCCCCCCCTCTTACA
CTTTTTTTTTTCTTGTTTCCAGACGAATTTGCGCCCTACCTCATCAGTTT
TACTTATTTCTCTCTATTCTTCCTTATTCTACCCTTTGCTGCTTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAACCTTTTGGACTCATGTGGA
CAAAAAAACACAAACCATTTACATAATTAAAATATAAATCTTGGGCTGGA
GAGATGGCTCTGATTTATATTTTAAGTCCCGAGTTAAAATACCAGCAACC
ACATGGTGGCTCACAACCATCTGTAATGGAATCTGATGCCCTCTTCTGGT
GTTTATGAAGACAGCTACAGTGTACTCACATAAAATAAATAATTCTAAAA
ATAAATAAAGAAATCTTTAATTTTGTCTATCAATCTATCTATCTTGGGCT
TGAGAATTGTTTCATCACCCCCCACCCCTTATTGATGCTGCAGAGAACTA
GAGTTCAATTTCCAGGACACAAAGAATCACAACAATTTTCATTGGGACTG
GCCACACATGTGGTGCACACATAAAGACAAAAACCATACACATAAGAAAA
TAATAACGTAAATGACCAGAAATACAAACTTTAATCCCCAAACATGAAGG
GTAGAGGCAGGTAGAAAAAAAGGAAAATAAAAGGTTGTGTTATAGCTGTG
TGTGGTGGCGCACGCCTTTAGTCCCAGCACTTGGGAGGCAGAGGCAGGCG
GATTTCTGAGTTTGAGGCCAGCCTGGTCTACATAGCAAGTTCCCATAATT
TCTGCTGCTCCTACATAGTAAGATCCTTTCTCAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_g16.b1 MSMg01no235_g16.b1 CHROMAT_FILE:
MSMg01no235_g16.b1 PHD_FILE: MSMg01no235_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:44 2005
         (270 letters)



>mm_chr15_99945437_99946106
          Length = 670

 Score =  485 bits (251), Expect = e-142
 Identities = 263/267 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccatatatgttctccttattcagttgcttgtactactcacacacatggctgct 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggaattcccatatatgtcctccttattcagttgcttgtactactcacacacatggctgct 411

                                                                       
Query: 64  ctcttctccaagcttaagcaaagcacaaatgaagtgcacacctgtatgtgccacactgat 123
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctcttctccaaggttaagcaaagcacaaatgaagtgcacacctgtatgtgccacactgat 351

                                                                       
Query: 124 aaagcaatggccaggactacggtaatggggaggggtaggtagagagagcactgattggga 183
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 350 aaagcaatggccaggactacggtaatgggaaggggtaggtagagagagcactgattggga 291

                                                                       
Query: 184 gcggtgctgcgcaggcctcaaaggcactcaagggagtgtatgtgcttccaaggcgtggca 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gtggtgctgcgcaggcctcaaaggcactcaagggagtgtatgtgcttccaaggcgtggca 231

                                      
Query: 244 agaaatatggggagtgagatgcgcata 270
           |||||||||||||||||||||||||||
Sbjct: 230 agaaatatggggagtgagatgcgcata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)