BAC Information

Click to search

BAC

Clone NameMSMg01-235K15
Chromosome15 (Build37)
Map Location 36,799,605 - 36,938,057
singlet/doubletdoublet
Overlap geneZfp706
Upstream geneVps13b, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz
Downstream geneLOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235K15.T7 (MSMg01no235_k15.b1)MSMg01-235K15.TJ (MSMg01no235_k15.g1)
ACCAG401168AG401169
length721732
length of high quality
(start - end)
311 (36 - 346)268 (427 - 694)
definitionCHROMAT_FILE: MSMg01no235_k15.b1 PHD_FILE: MSMg01no235_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:03 2005CHROMAT_FILE: MSMg01no235_k15.g1 PHD_FILE: MSMg01no235_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,937,752 - 36,938,057)(36,799,605 - 36,799,872)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGG
CTACTGGCAGGCAAGTTTGAGATTCTGACTGGGCATGGCGACACATGGTC
ATGTAGCTCCTGTGGAGGTGAAAGGGTTCAGTTCTAGGACAGACTGAACC
ACATAGTGGTTTTAAGGCCACAAAAGCAGTATACCTATAACCTAATTAGA
TCTAATGGGGAGCAGCTTGTTGCAGGTACAGGGCAACAAATGCAGAGATT
TACAACGCCATTTCTAACCACCACTAGATGTTAGAATTGCAATCGCTCTT
AATAAGGTATCTGAAGTTCACAACGTGGTCTAAATCAAGTGGAGGTGTTT
ATACGACCTTCCACCCCTCCCCCAAGTATTAGCAATCCAATAGCCAGCCT
GCACAGCCCAAGCGAGCACGGTAGGATTTAGCCGATTTTTCAGGCTCAAG
TCTCCATCTATGTGAAAGTCCCTAGTAAGCCAAAATACCCTGAGCACGGA
ACCAGTGAGGGAACAATGGCAGCGAGTCTGGTAGGGGGTCATGGCCGATC
TGCGTTCACGCGGGGCCCCTGATTCGACTCCCCCGCCGCTTCGGTTAGCG
CTTTTAATGGCTCTCGTGTTGTTCATTTATATACAACGATTTTTTTCCCA
CCCCCCCGTTCTCTTTGATTTATACTTCTATATATTGTATGCTTGATCCC
CTCTTGCCTTTTTTTTTCTTT
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCTCTTCCATAGCCTAGCCC
TCAATTCCCCAAGAGCCCAAGCCAAATTCCACCTGCTAACTAACATGCTT
ATATAGTCTCAGCAGGAGAGAAGAAAGCTGCATGTCCCCTCTGGTCATTC
CTGTAATTAAAGCTGGGGACATTTGTTAGTTCCTGTGCAGGTGGGGAGAT
GGCAAGGAAATAAGAGGGCAGTGAGTTAGTCACCTGCAGCCTGAGCCAGG
GTGCTCCTAATGTCTACAGTCTTTTCTCTGTCAAGGGCAGGGGTGACATG
GAGATTGTTTTTAGTCCCACTCACACAATAAACTGTGGATGCTCACAAGT
GTGCAGAAGTTAACGGACGCTGCGTGGCTTGCCCTACTAAGAGAATATGC
CGTGTATCTTCTTACATGTTAGATATCTTCTTGATTAAAGTGGCCTTAAG
CTACTTAGTCAGACCAGTTGCTTTGCTCCATCAACCCTCAGAAAGCAGGC
TTGTGAGACAATGGAGACCAGCCCTGCTGTCACACTGGGATTACCCAATG
AAGGAGGGCATGGGTGACCCATCAGGTCCATGCTCATAGGCTGCTCATCT
GTATCCTGAAACACTGAAAGGAAGCGGTCAAACAGAGCGTCTCAGCATGG
CCAATGTGACTCCCCGCACATGCATCCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_k15.b1 MSMg01no235_k15.b1 CHROMAT_FILE:
MSMg01no235_k15.b1 PHD_FILE: MSMg01no235_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:03 2005
         (311 letters)



>mm_chr15_36937548_36938258
          Length = 711

 Score =  592 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctggctactggcaggcaagtttgagattctgactgggcatggcgacacatggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattctctggctactggcaggcaagtttgagattctgactgggcatggcgacacatggt 451

                                                                       
Query: 65  catgtagctcctgtggaggtgaaagggttcagttctaggacagactgaaccacatagtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 catgtagctcctgtggaggtgaaagggttcagttctaggacagactgaaccacatagtgg 391

                                                                       
Query: 125 ttttaaggccacaaaagcagtatacctataacctaattagatctaatggggagcagcttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttttaaggccacaaaagcagtatacctataacctaattagatctaatggggagcagcttg 331

                                                                       
Query: 185 ttgcaggtacagggcaacaaatgcagagatttacaacgccatttctaaccaccactagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttgcaggtacagggcaacaaatgcagagatttacaacgccatttctaaccaccactagat 271

                                                                       
Query: 245 gttagaattgcaatcgctcttaataaggtatctgaagttcacaacgtggtctaaatcaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttagaattgcaatcgctcttaataaggtatctgaagttcacaacgtggtctaaatcaag 211

                 
Query: 305 tggagg 310
           ||||||
Sbjct: 210 tggagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no235_k15.g1 MSMg01no235_k15.g1 CHROMAT_FILE:
MSMg01no235_k15.g1 PHD_FILE: MSMg01no235_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:03 2005
         (268 letters)



>mm_chr15_36799405_36800072
          Length = 668

 Score =  487 bits (252), Expect = e-142
 Identities = 264/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttgccctactaagagaatatgccgtgtatcttcttacatgttagatatcttcttgatt 60
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 201 gcttgccctactaagagaatatgctgtgtatcttcttacatgttagatctcttcttgatt 260

                                                                       
Query: 61  aaagtggccttaagctacttagtcagaccagttgctttgctccatcaaccctcagaaagc 120
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtagcctttagctacttagtcagaccagttgctttgctccatcaaccctcagaaagc 320

                                                                       
Query: 121 aggcttgtgagacaatggagaccagccctgctgtcacactgggattacccaatgaaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcttgtgagacaatggagaccagccctgctgtcacactgggattacccaatgaaggag 380

                                                                       
Query: 181 ggcatgggtgacccatcaggtccatgctcataggctgctcatctgtatcctgaaacactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcatgggtgacccatcaggtccatgctcataggctgctcatctgtatcctgaaacactg 440

                                       
Query: 241 aaaggaagcggtcaaacagagcgtctca 268
           ||||||||||||||||||||||||||||
Sbjct: 441 aaaggaagcggtcaaacagagcgtctca 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)