Query= MSMg01no235_k19.b1 MSMg01no235_k19.b1 CHROMAT_FILE:
MSMg01no235_k19.b1 PHD_FILE: MSMg01no235_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:03 2005
(481 letters)
>mm_chr15_49728753_49729633
Length = 881
Score = 870 bits (450), Expect = 0.0
Identities = 471/478 (98%), Gaps = 2/478 (0%)
Strand = Plus / Plus
Query: 5 gaattccaagatttggaaaaaaacaataatatgacacaactggccaaaatgtagagatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagatttggaaaaaaacaataatatgacacaactggccaaaatgtagagatca 264
Query: 65 agtgactatgaggtgccttaccctacatacttacaaaagtgttcctatagaggagaggca 124
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 265 agtgactatgaggtgccttaccctacgtacttac-aaagtgctcctatagaggagaggca 323
Query: 125 gaaagatcttacgtatgtacatattttctttctgctgttgtagtgaactggactatgcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaaagatcttacgtatgtacatattttctttctgctgttgtagtgaactggactatgcta 383
Query: 185 tttcatgggacttatttcttccatcccaccatttgctgacttctgtgctgttacttctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 tttcatgggacttatttcttccatcccaccatttgctgacttctgtgctgttatttctat 443
Query: 245 agctaacaaattctacactgtatttttatgcatgataaaggaaaatgaccttaacatgag 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agctaactaattctacactgtatttttatgcatgataaaggaaaatgaccttaacatgag 503
Query: 305 gtctaggttcctcaaatccctccctactccaggaaggaatgataaagaacccgatcttat 364
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtctaggttactcaaatccctccctactccaggaaggaatgataaagaacccgatcttat 563
Query: 365 tcaaaccttgttcagctaagcacacttcaaaaatacacagctacat-gtaccaaagaaag 423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 tcaaaccttgttcagctaagcacacttcaaaaatacacagctacattgtaccaaagaaag 623
Query: 424 cattcattctgtaccaattttgtcctctgactcttgtattctttccatatactttcat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cattcattctgtaccaattttgtcctctgactcttgtattctttccatatactttcat 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_k19.g1 MSMg01no235_k19.g1 CHROMAT_FILE:
MSMg01no235_k19.g1 PHD_FILE: MSMg01no235_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:04 2005
(188 letters)
>mm_chr15_49746640_49747227
Length = 588
Score = 356 bits (184), Expect = e-103
Identities = 187/188 (99%)
Strand = Plus / Minus
Query: 1 agtgaaccaaggttgtgttgaggtctttcttggaccagagcctgagggcacagtagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agtgaaccaaggttgtgttgaggtctttcttggaccagagcctgagggcacagtagctgc 329
Query: 61 aactcctactaaactcagaaaggttaaaattactctcaagagagctgggcagcccatggg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 328 aactcctactaaactcagaaaggttaaaattactcttaagagagctgggcagcccatggg 269
Query: 121 aaaacaacagtccagtttgggaccacacaggtgtagggcttcacagaagcttggtgggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaaacaacagtccagtttgggaccacacaggtgtagggcttcacagaagcttggtgggtt 209
Query: 181 ggagaggc 188
||||||||
Sbjct: 208 ggagaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space: 104400
Effective search space used: 104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
