BAC Information

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BAC

Clone NameMSMg01-237C13
Chromosome15 (Build37)
Map Location 55,483,264 - 55,483,902
singlet/doubletsinglet
Overlap geneSntb1
Upstream geneNov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13, Mtbp
Downstream geneLOC665348, LOC100039908, Hba-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237C13.T7 (MSMg01no237_c13.b1)MSMg01-237C13.TJ (MSMg01no237_c13.g1)
ACCAG402191AG402192
length702738
length of high quality
(start - end)
642 (45 - 686)90 (60 - 149)
definitionCHROMAT_FILE: MSMg01no237_c13.b1 PHD_FILE: MSMg01no237_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:54 2005CHROMAT_FILE: MSMg01no237_c13.g1 PHD_FILE: MSMg01no237_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTTTCTCTCCATTGAAAGCTACGATGTTCAAGATCAATCTGTTG
TGTGCTTGTGCTATCTGCCCCCCTAGTTTGCAGATGGCTGCCTACATCTG
TTCCTTCATGAAACTCAGCGTCTGTGCATAGAAAGATGTCTAAAGACACT
ATGCTGCTATTGGGTTAAATCCCCACCCTACCACCATAGTTAACATCCTT
CTTGAAGTTATGCCCAAGTATAGTCATGTTGGGGATTAGGCTTCAGTGTT
TGAGGAGAGCGTTCTGCCTATAACTTTTTCACTAAGTATAAATATTGATT
ATATATGTTACCTGCCGATTAATGAAATCTTTATTGATTGGTGGAATGGA
TAAATTGGCAGTTTTTGTTTGGTGTTCAGTTGGAAAGATGGGAGAAGGTA
CATGAACAGAGCAGGAAGTTCCTCTGTGGTCCCTCAGAAAATGCCTGAAT
CCAAGACTAATATTAGTTCAATCTGCAGTGCTCAGGTACTTGCCGTGTCT
TTGCTGGGGCCCAGATGATTGAATGTTAGGTACTATTGGAGCCATAGGCA
TAGTGTTACCTGTGTGGACAGTAACCATAACCTGCTCGTACTGTGTTATT
CACACACATGGACAGGAGAGAATAAACCCAGGCACAAATAAATGCAGAGT
AA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXAGACTTATGAGAAGTGATGCGGAGACAGAAAAAGCCCTGGG
ATACCAGTGAGGGGGGTGGGGTAGGGATGACTGCAAATGCTTCTAATTGG
GTGCACATAGAATGCCTCTGACCAATCAGTGGAGAGATGTAGCTAAGCAG
AATGCTGGAGGAGAGTAGAACACCCTGAGTTCATTGCTCTCTTTCAGGAG
TTGCTTGTCATGTGACAGGAGTCTTCCTGATAACAGAGGGAATGGAAGAT
TTTTTTCTACCTCCCAGAGACCCATGCATGCACTTATTTTTATATTTTCC
CCCACTACCCCCCCTGGATTTAATGAATACATTATATTCTGAGGATACTC
CATAAAATAAAACACTTCTATTTTGACGTCTGGCTTCATTTAGGCCCTAC
CTCGCGAAACTCGACGCTATTGTGAATCTGCCCCTACCCCCCAAACTCTT
TCGCATTTCGACTTCTCTAGTGACCACTTCTTACTCTATGGTTACCTGTT
CCCATTCTATATGTACTTCTCCTCTTACTATTTCAGTCTTTTGCGTTGCC
CTATATATACTTTACACGCCATTCCCCCTTCATTAAGTTGCGCCACCTTG
TAACCAGTCTTTTCCTATTTCTTTTATTTGTTTTTTTTCATTCTAAGGCC
ACTTCGCCTTGTACAATAATATCCATATCCCATCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_c13.b1 MSMg01no237_c13.b1 CHROMAT_FILE:
MSMg01no237_c13.b1 PHD_FILE: MSMg01no237_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:54 2005
         (642 letters)



>mm_chr15_55483060_55484102
          Length = 1043

 Score = 1096 bits (567), Expect = 0.0
 Identities = 621/639 (97%), Gaps = 1/639 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttttctctccattgaaagctacgatgttcaagatcaatctgttgtgtgcttg 64
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gaattcctttctgtctccattgaaagctacgatgttcaagatcaatctgttgtgtgcttg 784

                                                                       
Query: 65  tgctatctgcccccctagtttgcagatggctgcctacatctgttccttcatgaaactcag 124
           ||| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tgcaagctgtctccctagtttgcagatggctgcctacatctgttccttcatgaaactcag 724

                                                                       
Query: 125 cgtctgtgcatagaaagatgtctaaagacactatgctgctattgggttaaatccccaccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cgtctgtgcatagaaagatgtctaaagacactatgctgctattgggttaaatccccaccc 664

                                                                       
Query: 185 taccaccatagttaacatccttcttgaagttatgcccaagtatagtcatgttggggatta 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 taccaccacagttaacatccttcttgaagttatgcccaagtatagtcatgttggggatta 604

                                                                       
Query: 245 ggcttcagtgtttgaggagagcgttctgcctataactttttcactaagtataaatattga 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 603 ggcttcagtgtttgaggagagcgttctgcctataactttttcactatgtataaatattga 544

                                                                       
Query: 305 ttatatatgttacctgccgattaatgaaatctttattgattggtggaatggataaattgg 364
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttatatatgttacctggtgattaatgaaatctttattgattggtggaatggataaattgg 484

                                                                       
Query: 365 cagtttttgtttggtgttcagttggaaagatgggagaaggtacatgaacagagcaggaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cagtttttgtttggtgttcagttggaaagatgggagaaggtacatgaacagagcaggaag 424

                                                                       
Query: 425 ttcctctgtggtccctcagaaaatgcctgaatccaagactaatattagttcaatctgcag 484
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 423 ttcctctgtggtccctcagaaaatgcctgaatccaagactagtattagttcaatctgcag 364

                                                                       
Query: 485 tgctcaggtacttgccgtgtctttgctggggcccagatgattgaatgttaggtactattg 544
            |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 363 ggctcaggtacttgccgtgtctttgctagggcccagctgattgaatgttaggtactaatg 304

                                                                       
Query: 545 gagccataggcatagtgttacct-gtgtggacagtaaccataacctgctcgtactgtgtt 603
           ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct: 303 gagccataggcatagtgttaccttgtgtagacagtaaccataacctgctcctactgtgtt 244

                                                  
Query: 604 attcacacacatggacaggagagaataaacccaggcaca 642
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 attcacacacatggacaggagagaataaacccaggcaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space:   652856
Effective search space used:   652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)