Query= MSMg01no237_e09.b1 MSMg01no237_e09.b1 CHROMAT_FILE:
MSMg01no237_e09.b1 PHD_FILE: MSMg01no237_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:03 2005
(539 letters)
>mm_chr15_8439158_8440096
Length = 939
Score = 934 bits (483), Expect = 0.0
Identities = 525/539 (97%)
Strand = Plus / Plus
Query: 1 tggacttgtgactccagcccctactactgtggcaactgttctaaagttctccctcatgga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tggacttgtgactccagcccctactactgtggcaactgttctaaagttctagttcatgga 260
Query: 61 gtgagcctggctatggtgccacttctgcattactctaacaaagtatctgacatgaacagg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gtgagcctggctatggtgccacttctgcattactctaacaaagtatctgacacgaacagg 320
Query: 121 ttaagtcaggaaggatttatttggctgtagggctccactgtttttagtcattatgtcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagtcaggaaggatttatttggctgtagggctccactgtttttagtcattatgtcaac 380
Query: 181 gagggcacagcagagcacagcagcctatatcctgaccaccaagaaacagaaagctgagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggcacagcagagcacagcagcctatatcctgaccaccaagaaacagaaagctgagaa 440
Query: 241 tggactggtaattaggaataaccttcaagtttgtgtccccagtgacctatttccttcaac 300
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggactgggaaccaggaataatcttcaagtttgtgtccccagtgacctatttccttcaac 500
Query: 301 tggccctcacttcctcaagtttccaccacctccaaatagtcccattggctggaaacggag 360
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tgggcctcacttcctcaagtttccaccacctccaaatagtcccattggctgggaacggag 560
Query: 361 tatacgctgagtctgttggggaatttcatggccaagctggaacaggtagtacagaacact 420
||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 561 tatacgctgcgtctgttggggaatttcatagccaagctggaacaggtagtagagaacact 620
Query: 421 taggattctcatctgtttgaatgaatgaggtcatttgagtcatctgaatgcctggtgctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggattctcatctgtttgaatgaatgaggtcatttgagtcatctgaatgcctggtgctc 680
Query: 481 actgctcatatccagtactaaagcccagaccctgcgtactgctgctctgtttgttcctt 539
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 actgctcatatccagtactaaagcccagaccctgcgtactgctgttctgtttgttcctt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_e09.g1 MSMg01no237_e09.g1 CHROMAT_FILE:
MSMg01no237_e09.g1 PHD_FILE: MSMg01no237_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:04 2005
(309 letters)
>mm_chr15_8594072_8594780
Length = 709
Score = 559 bits (289), Expect = e-164
Identities = 304/309 (98%)
Strand = Plus / Minus
Query: 1 gaaatcctggccgggctgaaagtggacatttatcttcatattaataaaatccctccacct 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 509 gaaatcctggccgggctgaaagtggacatttatcttcatattattaaaatccctccacct 450
Query: 61 ttcacctcgtctatgaaaggagcccattcaaggccactgaatgaacctcacatggggttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 449 ttcacctcgtctatgaaaggagcccattcaaggccactgaatgaacctcacatggggctc 390
Query: 121 ttctagctatacatttgcctacccactcaacattgaattatgacatttctgagaacaggt 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 389 ttctagctatacatttgcctacccactcaacattaaattatgacatttctgagaacaggt 330
Query: 181 acttctgtgatttcctggcctgcctttttaaaggacctttgaaagaaaggctgtgtttct 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 329 acttctgtgatttcctggcctgcctttttaaaggacctttgaaagaaacgctgtgtttct 270
Query: 241 ctagttgcaatgagtcccccgcacttgccagcagacccttctcctcaagggtgattggct 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 269 ctagttgcaatgagtcccccgcacttcccagcagacccttctcctcaagggtgattggct 210
Query: 301 tctgtcttt 309
|||||||||
Sbjct: 209 tctgtcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
