BAC Information

Click to search

BAC

Clone NameMSMg01-237L18
Chromosome15 (Build37)
Map Location 52,605,518 - 52,726,352
singlet/doubletdoublet
Overlap genenone
Upstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6
Downstream geneLOC100039745, Ext1, Samd12, EG665097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237L18.T7 (MSMg01no237_l18.b1)MSMg01-237L18.TJ (MSMg01no237_l18.g1)
ACCAG402598AG402599
length705699
length of high quality
(start - end)
283 (57 - 339)324 (36 - 359)
definitionCHROMAT_FILE: MSMg01no237_l18.b1 PHD_FILE: MSMg01no237_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:38 2005CHROMAT_FILE: MSMg01no237_l18.g1 PHD_FILE: MSMg01no237_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,726,070 - 52,726,352)(52,605,518 - 52,605,826)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAGGACCAGGAATGGGAGTTGGTGTGTTGGGGAGCAGGAGGAGG
CCACAAGGGGATCGGGGATTTTTAAAGGGGAAACTAGGAAAGGGGATAAC
ATTTGAAATGTAAATAAATAAATAAAATATCTAATTAGAAAAAATAAAGA
AAAAGAAAAAGACAGCAAATCTTACCAAGCAGAAGTCCCATAATGACAGT
TGTGTCTTCAGAGAAAGGCAGTCATTCCTGTCCAAATCAATGATGCCTCA
TATGCCTGGGGGAAGGAGGGAGGAGAGAGGCTGTGTCTTCTATTGTTTCC
CCCCCCCCCCACCAAAGCAGCCTATAGATGCTGTCCTTCCTCATAGCTCA
CCACAAAAAAGAAATTGTGTTTCAGTAGCCAAGAAACACAATGTCTGTGA
AAAGGGAGTAATGCATATAGTGAATCCTCTTTAAACTGTGTGATTTTCCC
CCCCTTGAGCGGCCGTTATAATATCTGTCTTCACGTTAACAACCATTGTT
CTGATTTCTATTTGAGAGTGCTTGATTTAATTATACAGCTACAATTTTAT
CGCCACTGTATACCCGCACTTCTTGTCCTTCCCCCCACCCGCTTTTGTCA
ACACTGTATTTCTCCCATCATCTCTTTCACTTTTTTTCCGTCCTTCCCCC
TTCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGGT
GAATATTTTCAGTCCCTGGTTTAATTTTCATCCTGTGGTTAAGAATATAT
ACTTGGGTGAGGGCTGGAGATGTTGGGGAAACTTCACAACGATCAGAGCT
GCTCGTTCTCCTGTTGAGAGGAAAACCTCTCTCTCAGGACCATTTCAAGC
AGCTTGCACCAGAGTTTTCTTGCAAGTGTTTTCACCAAGACCAGAGGGTG
GAGCATTCCCCTTGGTGAAGCAGCAGAGGGATTACTGTCACAATGCCGTG
GAATCCTGTGATTCAATTTTTTTGAAGGTCTGCAGTGAGGTTCAAACATT
TTTTTCTGACCGCCCGCGTTTGACTCACATGGTGAGCCAGCCTAAAAACT
CTCTCCAGTACTGTCCCCTCATTTACATTAGGCCCAAGAAAAGGCTTCTC
TTTATAATCACTACCTGCTTTTGCTCTCTGCTGTCAGCAGTATTGGGAGA
CTTGGTAACATGAAGAACGACGAGATGGTGGAGGGGACAGCAGTGCTTGT
TAAGTGGCTGGAGGCTACAGAAGCAGCAGAGCTAGAGAGCAGTATTTGAC
TTTGAAAGCCACCCAGGTCTCGAGCACAAGCTTAGTAGCAGATCGGTAGA
AGCAAACCCAGCTGTAGAGAAAGCAGTGGTAGCTGCCACCCCAATAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_l18.b1 MSMg01no237_l18.b1 CHROMAT_FILE:
MSMg01no237_l18.b1 PHD_FILE: MSMg01no237_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:38 2005
         (283 letters)



>mm_chr15_52725729_52726411
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaccaggaatgggagttggtgtgttggggagcaggaggaggccacaaggggatcggg 60
           ||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||
Sbjct: 624 caggaccaggaatgggagttggtgtgttggggagcaggaggaggggacgaggggatcggg 565

                                                                       
Query: 61  gatttttaaaggggaaactaggaaaggggataacatttgaaatgtaaataaataaataaa 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatttttagaggggaaactaggaaaggggataacatttgaaatgtaaataaataaataaa 505

                                                                       
Query: 121 atatctaattagaaaaaataaagaaaaagaaaaagacagcaaatcttaccaagcagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atatctaattagaaaaaataaagaaaaagaaaaagacagcaaatcttaccaagcagaagt 445

                                                                       
Query: 181 cccataatgacagttgtgtcttcagagaaaggcagtcattcctgtccaaatcaatgatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccataatgacagttgtgtcttcagagaaaggcagtcattcctgtccaaatcaatgatgc 385

                                                      
Query: 241 ctcatatgcctgggggaaggagggaggagagaggctgtgtctt 283
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcagatgcctgggggaaggagggaggagagaggctgtgtctt 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no237_l18.g1 MSMg01no237_l18.g1 CHROMAT_FILE:
MSMg01no237_l18.g1 PHD_FILE: MSMg01no237_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:38 2005
         (324 letters)



>mm_chr15_52605314_52606037
          Length = 724

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgggtgaatattttcagtccctggtttaattttcatcctgtggttaagaatata 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattctgggtgaatattttcagtccctggtttaattttcatgctgtggttaagaatata 264

                                                                       
Query: 65  tacttgggtgagggctggagatgttggggaaacttcacaacgatcagagctgctcgttct 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 tacttgggtgagggctggagatgttggggaaactccacaacgatcagagctgctcgttct 324

                                                                       
Query: 125 cctgttgagaggaaaacctctctctcaggaccatttcaagcagcttgcaccagagttttc 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgttgagaggaaagcctctctctcaggaccatttcaagcagcttgcaccagagttttc 384

                                                                       
Query: 185 ttgcaagtgttttcaccaagaccagagggtggagcattccccttggtgaagcagcagagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcaagtgttttcaccaagaccagagggtggagcattccccttggtgaagcagcagagg 444

                                                                       
Query: 245 gattactgtcacaatgccgtggaatcctgtgattcaatttttttgaaggtctgcagtgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gattactgtcacaatgccgtggaatcctgtgattcaatttttttgaaggtctgcagtgag 504

                    
Query: 305 gttcaaaca 313
           |||||||||
Sbjct: 505 gttcaaaca 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)