BAC Information

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BAC

Clone NameMSMg01-237N03
Chromosome15 (Build37)
Map Location 18,058,497 - 18,059,003
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162
Downstream geneLOC666835, LOC666839, Cdh10, EG666857
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N03.T7 (MSMg01no237_n03.b1)MSMg01-237N03.TJ (MSMg01no237_n03.g1)
ACCAG402658AG402659
length729797
length of high quality
(start - end)
507 (71 - 577)160 (78 - 237)
definitionCHROMAT_FILE: MSMg01no237_n03.b1 PHD_FILE: MSMg01no237_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:44 2005CHROMAT_FILE: MSMg01no237_n03.g1 PHD_FILE: MSMg01no237_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGG
AATTCAGTAGTGTTACAAACCAAGAAGACTTCAAATCCCTCACCATCAAT
CCTTTATCTTATTACACATGGCGGCTTCTGCATTTACCCTTCACTCTATA
TGGTTTAAAAAAATAGTGAGGTCATTGCCATATAGTGTAGATTTTTGTTT
TCTCAGAAGGCAAGTGAGGATAACTTGCTATACCAATAGGATTTCCACAG
AGATATAAAAACACATACAGTCTTCGGTGATCTCAGTACATGTGAATTAT
TACTAGCTTGATAACCTTATTCTACACAACATTTTAATATCACATCTAAG
CAATCCTTGGGTTTCTTTTGTATTTCTCAGAAAGATCTGGAGAATAAGAA
TTATTGAAATTAAATTACACACGTTCTGACTACAGATATGAAATAATTCA
CAGCTTGGAACCGAACTTTATATGTCTGAGACATTAGTGCATAGTACTAG
ATCAAGTGACCCAGATTGCAGCCCTCATTCATACCCCTTACTCTTCCCAT
TATGAATGGGAACTGAAAATTTTGAAAAGTAAAACTCTGGCTTTATTTTC
CATTAGATATTCTTTCACCATATACAGCATCACTTAAGAAAGAGGAAAAA
TGCTTTAATAATGATATCAAGTAGAGACACCAGATATTCCATAGAAGTAT
TTTAAATACCCATTTTAAGCTTTTGTAAG
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAAGGAGAAGGCTGGGAGG
AAATTGGGGAGAGACTGTGTGAGGAGGAACAAAGAAGGGGGCAGAGATCA
GGAATAAAATAAAAAAAAATAAAGAAAGAACTAAAGAAATAAAGGTTACA
AGAAAGGAAGGGAGGGAGGGAGGGTGGGGGGGAGGCCTCTCCTTCTCTCT
TCTTTTTCTCTTTCCCCTCTTTCCCATCTTACCACCCCTTCTCCTCTTTC
ACCCAACTCCACCACCCCCCCTTTTTTTTCAACACTGTACCATCAATCTC
CCTCCACAAATCTAAATTAATTCCCCCCCCCCAAACACACACCACCACAA
ACACTAATCTCTTCTTCTCATCTCCACCCCCCCCCCCTAATCTCTTTTCC
CTCTCCACTTCCTCCTCTCTGTTATTCCTCCATTCTGTTGCTTACTACTT
CTTCCTACCACCTCCCACTACCTCCTTCTCTTCCCTTCCTTTTTACACCC
CCATACACCCCCCATAACTTATCCCCACCCCCCCCCCCGCTATTCTAATC
ACACTACCTTGCTTATTCTCCACCGTCTTATTTTTTGTTTATTCTCATCT
TTTGTGATTGTGTACATCCCTTTTATTCCTTTTCCTCTTTACTCCCTAGC
AAATTTATATAGTTTATATTAACAATTCTCCCCTATGATTTTTATTTATC
CATCTTAAACTCTATAATCCTATACTCTATCTTTTTTATATTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n03.b1 MSMg01no237_n03.b1 CHROMAT_FILE:
MSMg01no237_n03.b1 PHD_FILE: MSMg01no237_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:44 2005
         (507 letters)



>mm_chr15_18058297_18059203
          Length = 907

 Score =  973 bits (503), Expect = 0.0
 Identities = 506/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaagacttcaaatccctcaccatcaatcctttatcttattacacatggcggcttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 caagaagacttcaaatccctcaccatcaatcctttatcttattacacatggcggcttctg 648

                                                                       
Query: 61  catttacccttcactctatatggtttaaaaaaatagtgaggtcattgccatatagtgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 catttacccttcactctatatggtttaaaaaaatagtgaggtcattgccatatagtgtag 588

                                                                       
Query: 121 atttttgttttctcagaaggcaagtgaggataacttgctataccaataggatttccacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 atttttgttttctcagaaggcaagtgaggataacttgctataccaataggatttccacag 528

                                                                       
Query: 181 agatataaaaacacatacagtcttcggtgatctcagtacatgtgaattattactagcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agatataaaaacacatacagtcttcggtgatctcagtacatgtgaattattactagcttg 468

                                                                       
Query: 241 ataaccttattctacacaacattttaatatcacatctaagcaatccttgggtttcttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ataaccttattctacacaacattttaatatcacatctaagcaatccttgggtttcttttg 408

                                                                       
Query: 301 tatttctcagaaagatctggagaataagaattattgaaattaaattacacacgttctgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 407 tatttctcagaaagatctggagaataagaattattgaaattaaattacacaggttctgac 348

                                                                       
Query: 361 tacagatatgaaataattcacagcttggaaccgaactttatatgtctgagacattagtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tacagatatgaaataattcacagcttggaaccgaactttatatgtctgagacattagtgc 288

                                                                       
Query: 421 atagtactagatcaagtgacccagattgcagccctcattcataccccttactcttcccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atagtactagatcaagtgacccagattgcagccctcattcataccccttactcttcccat 228

                                      
Query: 481 tatgaatgggaactgaaaattttgaaa 507
           |||||||||||||||||||||||||||
Sbjct: 227 tatgaatgggaactgaaaattttgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)