BAC Information

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BAC

Clone NameMSMg01-260F02
Chromosome15 (Build37)
Map Location 31,850,994 - 31,851,591
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnnd2, 9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
Downstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962, Sdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260F02.T7 (MSMg01no260_f02.b1)MSMg01-260F02.TJ (MSMg01no260_f02.g1)
ACCAG403016AG403017
length779752
length of high quality
(start - end)
277 (43 - 319)597 (74 - 670)
definitionCHROMAT_FILE: MSMg01no260_f02.b1 PHD_FILE: MSMg01no260_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:23 2005CHROMAT_FILE: MSMg01no260_f02.g1 PHD_FILE: MSMg01no260_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGAGAGATGATCCGTGGAGCCTCCTGATTCCTAGGCTGGTGCGGCCAG
AAAGTTTGCAGATAGAGAGTGCCCCAGAATATTGTTAGATTAAACAATGG
GGTGGGGTGAGGGACACAGGCTGAAGGAGAAGATCTGTGGAGTTTCCTGG
GATTTCCATAGGAAGAACAGGCCTCTGAATTTGTATACTCCAGGGATAAG
GATGAGTCTAGGGGATTGGAATATGGAGGATAGGAAGGAGAGTGAAGATT
ACCTACCTGATTCCTGTACATTCTATTTCATTGTCCATTCATGACTTTAC
AACTTCCCAATGACTTTGCCATATGTCTTAGTCTGGACCTCTATTCTTGT
ACTATCATTATGACCACCCCCCCACGCTGGGGAAGAATGGATTTATTTCA
GTCTTCACTCTCCAATTGCCGTTCCCGATCTAATGGATGCTTGTTCTGCT
TCTCTTCGTTCCTTCTCGATCTTATGACTTGTTTTCCTCTGTTTTTTTCC
AATAACGTTACCATTCTCGGCTTGTCCCCGCGCTCCTCCTTTTGGTTACC
TAGCCCCATTACGTTCTCGCGCTCTTCTTTCCCCTTTTTTCCTGCTCCCC
TCCCTCCTTTTTTCCGTCTTCCGCCTCGTCCTTTTCTCGTTTTTCCTTTT
TCCCCCTCGTCTCCTCCGTTTGGATTTATCCTTCCTCGCGTTGCGTGTTN
ATTTCTTCTCCCCCTGCTCTGCCGGGTTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCTTCCTCCTAAGCTAAACTCATCCT
TTCTGAGAGATGCTGCAGGCCTCCGCTGACAAAAAGGAATGGCAAAGCCT
CCCCCCATAGAGCTCTGTCACCTCCAGATGGCACATCATGCAAACAGGTT
TCACACAAAAATCCTGTCACACATACCAACGTTCTTGGCAAGCAGGTATC
AATCTGTTCCTGGAAACTGCAGACCCAGCTCTTGAACCCTCAGGAATTCC
TTGAGTGCTTGGCAGAGTAGAGACAGAATCAGCAATCAAGGCGAAGAAAG
AAAGAAAAAAAAAAGGTATCCACTGCTAAACCAAGATGAGATATGCAGGA
GAACAGAAGTGTGGAGCCCTCCGGGTACCTGAGCTCCTGCCTGTAGACAA
CCAGAGGAGTCTGACCTCACTGAAGCTAACTTGAGCAACACACACTCCAC
TCAGTAAAGGTTTTCACCATCAATCTTTGTGCAAATGTACCATCCCAACA
CTAAGATCTTCTGATTAAAGTGGTTGAAGATTTGGAGAGTAAACCGTGAA
TTTTTGTTGAATGTCTTTAAAATGCTGACCATACCTGCTATTCGAAGGTG
TATTCCTTTTAGGGACACTGTAAATACTAATGAACACCCCCTCAGATACA
GAGCAAAACTAGCCCACACGTGCAAATATTTTGAGCATCTCTAATAAAAT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_f02.g1 MSMg01no260_f02.g1 CHROMAT_FILE:
MSMg01no260_f02.g1 PHD_FILE: MSMg01no260_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:23 2005
         (597 letters)



>mm_chr15_31850794_31851791
          Length = 998

 Score = 1110 bits (574), Expect = 0.0
 Identities = 592/598 (98%), Gaps = 1/598 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttcctcctaagctaaactcatcctttctgagagatgctgcaggcctccgctgacaaa 60
           |||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 798 agcttcctcctaagataaactcatcctttctgagagatgctgcaggcctctggtgacaaa 739

                                                                       
Query: 61  aaggaatggcaaagcctccccccatagagctctgtcacctccagatggcacatcatgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaggaatggcaaagcctccccccatagagctctgtcacctccagatggcacatcatgcaa 679

                                                                       
Query: 121 acaggtttcacacaaaaatcctgtcacacataccaacgttcttggcaagcaggtatcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acaggtttcacacaaaaatcctgtcacacataccaacgttcttggcaagcaggtatcaat 619

                                                                       
Query: 181 ctgttcctggaaactgcagacccagctcttgaaccctcaggaattccttgagtgcttggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgttcctggaaactgcagacccagctcttgaaccctcaggaattccttgagtgcttggc 559

                                                                       
Query: 241 agagtagagacagaatcagcaatcaaggcgaagaaagaaag-aaaaaaaaaaggtatcca 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 558 agagtagagacagaatcagcaatcaaggcgaagaaagaaagaaaaaaaaaaaggtatcca 499

                                                                       
Query: 300 ctgctaaaccaagatgagatatgcaggagaacagaagtgtggagccctccgggtacctga 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 498 ctgctaaaccaagatgagatatgcaggagaacagaagtgtggagccctccgggtgcctga 439

                                                                       
Query: 360 gctcctgcctgtagacaaccagaggagtctgacctcactgaagctaacttgagcaacaca 419
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 438 gctcctgcctgtagacaaccagaggagcctgacctcactgaagctaacttgagcaacaca 379

                                                                       
Query: 420 cactccactcagtaaaggttttcaccatcaatctttgtgcaaatgtaccatcccaacact 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cactccactcagtaaaggttttcaccatcaatctttgtgcaaatgtaccatcccaacact 319

                                                                       
Query: 480 aagatcttctgattaaagtggttgaagatttggagagtaaaccgtgaatttttgttgaat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagatcttctgattaaagtggttgaagatttggagagtaaaccgtgaatttttgttgaat 259

                                                                     
Query: 540 gtctttaaaatgctgaccatacctgctattcgaaggtgtattccttttagggacactg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtctttaaaatgctgaccatacctgctattcgaaggtgtattccttttagggacactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 998
Length adjustment: 10
Effective length of query: 587
Effective length of database: 988
Effective search space:   579956
Effective search space used:   579956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)