BAC Information

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BAC

Clone NameMSMg01-260K03
Chromosome15 (Build37)
Map Location 99,882,421 - 99,882,989
singlet/doubletsinglet
Overlap genenone
Upstream genePrph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
Downstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260K03.T7 (MSMg01no260_k03.b1)MSMg01-260K03.TJ (MSMg01no260_k03.g1)
ACCAG403243AG403244
length1,113739
length of high quality
(start - end)		---559 (83 - 641)
definitionCHROMAT_FILE: MSMg01no260_k03.b1 PHD_FILE: MSMg01no260_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:47 2005CHROMAT_FILE: MSMg01no260_k03.g1 PHD_FILE: MSMg01no260_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGCGGGGGGAGCGCGATGAGAANAAGANNATATTATTATTTNNANAATA
ATNCCTCATAATAAATTTTGGCGGGGCGGCTTAATGACGTAGTTCTTTTA
TTTTTTCCCCAAAAAAGAGCGGGGGGGATTTTTCTGAAANAATTTTATTT
TCCACCAGAAAAAAAATACATTGGAATGGTGGGGTTCGGTATATCCCATT
ACTTTTTCTGTGCTGGGCTAGGGGTTTTCTATTATTATTTTTTTTTTGGC
GCCGGAGGGGGTAGGGGTTTTGGTGCTGTAATAGGTTTTTTGTGTATTTA
TATGGAGGTTGGTTTTTATAGTGTGTGTGATGCTCACAACCGCGAACACT
AGGTGTGTTTAGTTGTTAGAGGAGGGTAGAGTGATTGAAATATCTGANGG
GTGGTTGGGTATTTTCTAATTATAAAACCAGTGAGAAAAATGAGTGATTA
ACTCTCTGCTTTTATTGTTAAGATTTTATATTTATTTTTATAAATACTGT
TTTTTTTGGTGATTTGATTCTGATATATAAATTATACATAAAAATTGACT
GGGTGTTTTATTTTCGTGCGTGAGTATAAATAATATTTGGTGTGTAGTAG
TGTGGGCTTTAGGTGGGTGAGAAGACACTGTAAAGAAATTGATAAATTGT
GTGTTTGGTTTGTGTGTAGTGACATAATATAATATATAACCGGAAGTGGT
AATGAGAATAACGTGAAAGGGGTATAATGTTTGGAGTAGTATAGTATTAT
TAAAAGAATAATATAACATTGTTTATATATTGTGGAGTGGGGAGCAACTG
ATGGGGTGTGTATTGTGTGAAGGTATAATATTAGTGTTTGATTATATGGT
TATGTATTGGGTTGTTAATTTAATAATATTATATTATATATGAATTTATG
AGTAGAATCTATGCGGGGGTATATATGTTGGTCATAATATTAATACTTAG
GTAATGTTGGGTTGTGGTCTCTTAGTCAGACAGTATCGTCTTACTGTATT
TCTCCTCCACAAATATTTGAAATTAGTAACTATGCATAATTAATACTACA
TAAGTTCGAGACGTCTGTGGGAGGTGTGCGTGTTTGTGATAATGGTGATA
ATATAGAGTAGAC

CCAAANTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTTGAACAT
AGTGAGTTCCAGGATAGCTAAGGGCACACAGAGATACTGTCTCAAAAAAC
AACCAAAAACCCCAAAACCAGCCAATCAACCAACCAACCAAATAAACAAA
CAAAACTCCCTAATAAGAGCAGAGTTTGAGGGCTGGAGCGATGGCTCAAT
GGCTAAAGCATTGGCTGCTTTGACTCTCACCCTGCGCTGTAGCCCCAGCT
ACTGAGGATGCTGAGGATCATGTGTGCTCAGGAGATTGCGGCCAGATTGA
CAATTTAGAGTTTTTTGGTTTTTGTTTTGTTTTTTTTTTTTTTTTTTAAA
AAAGACAGGGTTTCTGTAGCTCTGCCTACCCTGGAATTCACTGGATAGAC
CAGGTTAGCCTCAGAGTCACAGAGAGCTGCCTCTGCCTCCTGGGTATTAG
AGTTAAAGGTGGGTAGCACACCAGCTAAGATGTATTTGAGTGTGTGTGTA
CACGCGTGTGTAAGTGTGTAAAGGTAGAATGAAGATTTCATTTCCATAGT
AGAGCCTTGACCATTTCCATGGACAATGGGAATGATCACTTAGAGGGAGG
AGGATGACCAATCAGGAGAGAAAATGGAGAGCGTGGGAAGGCCTCTCTGA
CAGGCGAGTTCCTGTGAATTGAAGGATGCACCAGGTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_k03.g1 MSMg01no260_k03.g1 CHROMAT_FILE:
MSMg01no260_k03.g1 PHD_FILE: MSMg01no260_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:47 2005
         (559 letters)



>mm_chr15_99882231_99883189
          Length = 959

 Score = 1000 bits (517), Expect = 0.0
 Identities = 553/569 (97%), Gaps = 10/569 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagccttgaacatagtgagttccaggatagctaagggcacacagagatactgtct 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 191 aaggccagccttgaacatagtgagttccaggatagctaagggtacacagagatactgtct 250

                                                                       
Query: 61  caaaaaacaaccaaaaaccccaaaaccagccaatcaaccaaccaaccaaataaacaaaca 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 251 caaaaaacaaccaaaaacccccaaaccagccaatcaaccaaccaaccaaataaacaaaca 310

                                                                       
Query: 121 aaactccctaataagagcagagtttgagggctggagcgatggctcaatggctaaagcatt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 aaactccctaataagagcagagtttgagggctggagtgatggctcaatggctaaagcatt 370

                                                                       
Query: 181 ggctgctttgactctcaccctgcgctgtagccccagctactgaggatgctgaggatcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggctgctttgactctcaccctgcgctgtagccccagctactgaggatgctgaggatcatg 430

                                                                       
Query: 241 tgtgctcaggagattgcggccagattgacaatttagagttttttggtttttgtttt-gtt 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 431 tgtgctcaggagattgcggccagattgacaatttagagttttttggtttttgtttttgtt 490

                                                                       
Query: 300 tt-tttt-tttt-------ttttttaaaaaagacagggtttctgtagctctgcctaccct 350
           || |||| ||||       ||||||||||||||||||||||||||||||||||||  |||
Sbjct: 491 ttgttttgttttgttttgtttttttaaaaaagacagggtttctgtagctctgcctggcct 550

                                                                       
Query: 351 ggaattcactggatagaccaggttagcctcagagtcacagagagctgcctctgcctcctg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggaattcactggatagaccaggttagcctcagagtcacagagagctgcctctgcctcctg 610

                                                                       
Query: 411 ggtattagagttaaaggtgggtagcacaccagctaagatgtatttgagtgtgtgtgtaca 470
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggtattggagttaaaggtgggtagcacaccagctaagatgtatttgagtgtgtgtgtaca 670

                                                                       
Query: 471 cgcgtgtgtaagtgtgtaaaggtagaatgaagatttcatttccatagtagagccttgacc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cgcgtgtgtaagtgtgtaaaggtagaatgaagatttcatttccatagtagagccttgacc 730

                                        
Query: 531 atttccatggacaatgggaatgatcactt 559
           |||||||||||||||||||||||||||||
Sbjct: 731 atttccatggacaatgggaatgatcactt 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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