Query= MSMg01no260_k17.b1 MSMg01no260_k17.b1 CHROMAT_FILE:
MSMg01no260_k17.b1 PHD_FILE: MSMg01no260_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:50 2005
(447 letters)
>mm_chr15_35705112_35705958
Length = 847
Score = 814 bits (421), Expect = 0.0
Identities = 436/441 (98%)
Strand = Plus / Minus
Query: 7 gaattcttctgcttttccttatcacaagattgagtaactcatttcattgtcaagataatc 66
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gaattcttctgcttttcattatcacaagattgagtaactcatttcattgtcaagataatc 588
Query: 67 cccctttactctttcttttgcacttgccagttactccaaaatgacaaataaaatcccaga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cccctttactctttcttttgcacttgccagttactccaaaatgacaaataaaatcccaga 528
Query: 127 tgttatagaccagcgagcattcaactttttcttgagtgttgggtttaagctacttggtca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tgttatagaccagcgagcattcaactttttcttgagtgttgggtttaagctacttggtca 468
Query: 187 aaatgtcaaaattgacagggccttgatgcccacacccagtattcattaaggatcgttggt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaatgtcaaaattgacagggccttgatgcccacacccagtattcattaaggatcgttggt 408
Query: 247 ggtttgtataactgtcaactagctatatttatgcttccatcatcagtggatccttaaaag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggtttgtataactgtcaactagctatatttatgcttccatcatcagtggatccttaaaag 348
Query: 307 ttaaatctgccctgtctttaactgtcaagaaattcatttctcattgttcagaccctggaa 366
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 347 ttaaatctgccctgactttaactgtcaagaaattcatttctcattgttcagacactggaa 288
Query: 367 agagatgcatccctttctgagaacagcaagagtctttggggtgctgtaaacagctcactg 426
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agagatgcatttctttctgagaacagcaagagtctttggggtgctgtaaacagctcactg 228
Query: 427 ctgcaacacaggatttgaggt 447
|||||||||||||||||||||
Sbjct: 227 ctgcaacacaggatttgaggt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_k17.g1 MSMg01no260_k17.g1 CHROMAT_FILE:
MSMg01no260_k17.g1 PHD_FILE: MSMg01no260_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:50 2005
(666 letters)
>mm_chr15_35550428_35551493
Length = 1066
Score = 1234 bits (638), Expect = 0.0
Identities = 658/665 (98%), Gaps = 1/665 (0%)
Strand = Plus / Plus
Query: 1 tacagttgtgttttttgtttaacttccttcatgctacacagccatttttagattagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagttgtgttttttgtttaacttccttcatgctacacagccatttttagattagttca 260
Query: 61 tgtcttacatatgttctcttattattactaacatttagctatataattgaccttcatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttacatatgttctcttattattactaacatttagctatataattgaccttcatttg 320
Query: 121 ttcagtgtttgttgttaaacatttaggacttttccagatgtacagtatgctgtaaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagtgtttgttgttaaacatttaggacttttccagatgtacagtatgctgtaaatatt 380
Query: 181 tctgtttatgtttctgcagacatcagctttttttattttattttattttttttatttagg 240
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 381 tctgtttatgtttctgcagacataagcttttttt-ttttattttattttttttatttagg 439
Query: 241 gaaactactttaattggctggattaggagatatatatatatatattcaaaactaccaaac 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaactactttaattggctggataaggagatatatatatatatattcaaaactaccaaac 499
Query: 301 ttgttttaaatcttctgttcttaccagcagaaaatgagagtttcagttactctatgggat 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcgttttaaatcttctgttcttaccagcagaaaatgagagtttcagttactctatgggat 559
Query: 361 atttagaatagttgtacttcttagttatacacattttaattatacacattttaattttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttagaatagttgtacttcttagttatacacattttaattatacacattttaattttat 619
Query: 421 gatttttaatcctcagtgtttcagctgaactccaactgaaaactgatgtagcctctgcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatttttaatcctcagtgtttcagctgaactccaactgaaaactgatgtagcctctgcat 679
Query: 481 gcttcctttgtttgagagctgtgtgttctttgaaactagaattacagttgaggtttatgc 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 gcttcctttgtttgagagctgtgtgttctttgaaactagaattatagttgaggtttatgc 739
Query: 541 cattgcttgcttgccacattanacacatgtgatgttacatctttttaagaacaatagtgg 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cattgcttgcttgccacattaaacacatgtgatgttacatctttttaagaacaatagtgg 799
Query: 601 aaggaatcagaagtagtgacaataaaagcagtattgtgcctctgaagtaaataaccctaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 800 aaggaatcagaagtagtgacaataaaagcagtattgtgcctctgaagtaaataacactaa 859
Query: 661 accct 665
|||||
Sbjct: 860 accct 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
