Query= MSMg01no261_j22.b1 MSMg01no261_j22.b1 CHROMAT_FILE:
MSMg01no261_j22.b1 PHD_FILE: MSMg01no261_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:03 2005
(620 letters)
>mm_chr15_19129772_19130791
Length = 1020
Score = 1069 bits (553), Expect = 0.0
Identities = 577/585 (98%), Gaps = 2/585 (0%)
Strand = Plus / Plus
Query: 1 tggttcgaagtcaaaacgtccccttgaaagtgataattctgagggtaagagctgccgcac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tggttcgaagtcaaaacgtccccttgaaagtgataattctgagggtaagagctgtggcac 260
Query: 61 tcacaagtagtttcccactatacatctggttatggtcatttaaggtactcatattttcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaagtagtttcccactatacatctggttatggtcatttaaggtactcatattttcaa 320
Query: 121 gcattagaagaatatatacattttttatacttttacatctttttacaaccttactaaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattagaagaatatatacattttttatacttttacatctttttacaaccttactaaact 380
Query: 181 gctgttagttttagctttctatagtaaagacttatatttaattagaaactttaaacactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgttagttttagctttctatagtaaagacttatatttaattagaaactttaaacactt 440
Query: 241 tatttagattaaaattttggggattttataaataaagcagtatatctatatgtatgtgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttagattaaaattttggggattttataaataaagcagtatatctatatgtatgtgta 500
Query: 301 tgcgtacgcgtatgtgtataggatatatatgcatatgtatatgtacatgtatatgtatat 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcgtacgcgtatgtgtataggatgtatatgcatatgtatatgtacatgtatatgtatat 560
Query: 361 ataaacttcacggggtttttgcttaaacagttactgatttacaatattttctaggattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaacttcacggggtttttgcttaaacagttactgatttacaatattttctaggattta 620
Query: 421 tatactttaaaatcataaaaagctattcatcttttctttagttgaagaagaacaaaatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatactttaaaatcataaaaagctattcatcttttctttagttgaagaagaacaaaatct 680
Query: 481 gttatttacagactgattcttcttacaaaatttggcaatata-a-atatacatatacata 538
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 681 gttatttacagactgattcttcttacaaaatttggcaatatacatatatacatatacata 740
Query: 539 tacatatacatatacatatacatatacatatacatatacatatac 583
|||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct: 741 tacatatacatatacatatacatatacacatacacatacacatac 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_j22.g1 MSMg01no261_j22.g1 CHROMAT_FILE:
MSMg01no261_j22.g1 PHD_FILE: MSMg01no261_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:03 2005
(599 letters)
>mm_chr15_19290185_19291183
Length = 999
Score = 1106 bits (572), Expect = 0.0
Identities = 590/596 (98%)
Strand = Plus / Minus
Query: 1 ttctctggaaatacaatgggataccttaaactttcagtagtttcttctctttattagcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ttctctggaaatacaatgggataccttaaactttcagtagtttcttctctttattagcgt 827
Query: 61 ttttaaaaataattaactattttttatattctggaaatacacatgtgtcccagtttcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ttttaaaaataattaactattttttatattctggaaatacacatgtgtcccagtttcaca 767
Query: 121 agaaggcaacatacatatgctttctgttttatcagtgcaaacagaaattaatacttgcat 180
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 766 agaaggcaacataaatatgctttctgttttaccagtgcaaacagaaattaatacttgcat 707
Query: 181 tagagcatcatagataaaattgacagaactttctgtagcaaacatccacacttctactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tagagcatcatagataaaattgacagaactttctgtagcaaacatccacacttctactca 647
Query: 241 cgagaaggtggcatgatcgtctttacaacatttccaattgaaaagttgtcaatattacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cgagaaggtggcatgatcgtctttacaacatttccaattgaaaagttgtcaatattacaa 587
Query: 301 acagaactagcttgctatcataaactcctcagtgagtttctatatttaactgtccccagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 acagaactagcttgctatcataaactcctcagtgagtttctatatttaactgtccccagc 527
Query: 361 tgtgatgcatcatctagttctgattttctaacaggtctgagaaggaaagagcagctactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgtgatgcatcatctagttctgattttctaacaggtctgagaaggaaagagcagctactg 467
Query: 421 ccacagccatttcctctgattgcgcaggaatgccacctagtgtcacaacagttactgagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccacagccatttcctctgattgcgcaggaatgccacctagtgtcacaacagttactgagt 407
Query: 481 cctagctgctttctcaaagaatttaacattccacagcacagtgcagccatacttttcacg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cctagctgctttctcaaagaatttaacattccacagcacagtgcagccatacttttcacg 347
Query: 541 gttgtacaccaaagcaaagagcatggaatggcctgatatgacctaacagcatagga 596
| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 346 gctgtacaccaaaggaaacagcatggaatggcctgatacgacctaacagcatagga 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
