Query= MSMg01no263_e01.b1 MSMg01no263_e01.b1 CHROMAT_FILE:
MSMg01no263_e01.b1 PHD_FILE: MSMg01no263_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:07 2005
(682 letters)
>mm_chr15_13723362_13724443
Length = 1082
Score = 1234 bits (638), Expect = 0.0
Identities = 668/678 (98%)
Strand = Plus / Minus
Query: 5 gaattcagacactgttcacataatcatcttctcatctcaagatactgaaattgtcttcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 gaattcagacactgttcacataatcatcttctcatctcaagatactgaaattgtcttcca 823
Query: 65 cagcaggatttctattcaccttttacctcattgtctccagagccggaaagaattaaaagt 124
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cagcaggatttctattcattttttacctcattgtctccagagccggaaagaattaaaagt 763
Query: 125 tgggaagcttcacctctaagcatactttccaacaaggcgcccaagttttgctgagcttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgggaagcttcacctctaagcatactttccaacaaggcgcccaagttttgctgagcttca 703
Query: 185 gaaactctgctaaagggttcttgtatgtttaggtcaaaggtgggcttttttattagaaac 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 702 gaaactctgctaaagggttcttgtgtgtttaggtcaaaggtgggcttttttattagaaac 643
Query: 245 tcttttgctacctcaatcttcccatgaaacaagaggcacaaagtccactcagaaaaccat 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 642 tcttttgctacctcaatcttcccatgaaacaagaggcacaaagtccactcaaaaaaccat 583
Query: 305 agccttatagggatagaaaactgcaagtcaaaccagaaggcctcaggaaaaataaaagtt 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 582 agccttatagggatagaaaactgcaagtcaaacaagaaggcctcaggaaaaataaaagtt 523
Query: 365 aatagaaagtgaccttatttgcatgtgcatcccttcaaacaatacttcaaggtttaatgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aatagaaagtgaccttatttgcatgtgcatcccttcaaacaatacttcaaggtttaatgg 463
Query: 425 cttagtgagaaaatcattttctttctttaatcctcacattgtgttactatcttccctaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cttagtgagaaaatcattttctttctttaatcctcacattgtgttactatcttccctaat 403
Query: 485 ctcaatgtggtttaaaatgccttgtcagtgggatgctaaaataataataataacaatgtt 544
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctcaatgcggtttaaaatgccttgtcagtgggatgctaaaataataataataacaatgtt 343
Query: 545 tgtattaaagaaaagtgagcacaagattcatcccacacagggaagtctgcgtaacctcgt 604
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 342 tgtattaaagaaaagtgagcacaagattcatcccacacagggaagtctgtgtaacctctt 283
Query: 605 aataaaggacggcttataatttagcaaaagtttggactccagtattagacaacataaaaa 664
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 282 aataaaggacggcctataatttagcaaaagtttggactccagtattaggcaacataaaaa 223
Query: 665 agatactccaggaagact 682
||||||||||||||||||
Sbjct: 222 agatactccaggaagact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_e01.g1 MSMg01no263_e01.g1 CHROMAT_FILE:
MSMg01no263_e01.g1 PHD_FILE: MSMg01no263_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:07 2005
(518 letters)
>mm_chr15_13567521_13568438
Length = 918
Score = 973 bits (503), Expect = 0.0
Identities = 512/517 (99%), Gaps = 4/517 (0%)
Strand = Plus / Plus
Query: 1 agagaacttttgttaaagttaatagtgatggaagtgatgttttcctaactactcttgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaacttttgttaaagttaatagtgatggaagtgatgttttcctaactactcttgact 260
Query: 61 aggcagtagattaaagtgtgaatgcatcagcccatttattccttaacaaaatgtagagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcagtagattaaagtgtgaatgcatcagcccatttattccttaacaaaatgtagagac 320
Query: 121 aggtgatgtcagtatttgcaatatatgtttgaataacatatcccttattagaactcatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgatgtcagtatttgcaatatatgtttgaataacatatcccttattagaactcatgc 380
Query: 181 ttgactctacagttgataggttttaggttctaggagctatggtaagcagagtactgaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgactctacagttgataggttttaggttctaggagctatggtaagcagagtactgaaaa 440
Query: 241 tagatgacatctgtttaattttttactaaaaatggtacttctaagtgtacacagcagtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagatgacatctgtttaattttttactaaaaatggtacttctaagtgtacacagcagtga 500
Query: 301 gttctcgcaaaaggagattgaggctagaatgtcactgcatatttatttttaaaaacaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttctcgcaaaaggagattgaggctagaatgtcactgcatatttatttttaaaaacaagt 560
Query: 361 aacattatacaaactgtcagtttatatatttagaattatgtatgtctgcacacagacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacattatacaaactgtcagtttatatatttagaattatgtatgtctgcacacagacaca 620
Query: 421 cacacacacacacacacatatactttttccaacaattaatgaaaaagagactgcaaattt 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacacacacacaca----tatactttttccaacaattaatgaaaaagagactgcaaattt 676
Query: 481 gagagagagagaaaggaagggtatatgagggagttgg 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 677 gagagagagagaaaggaagggtatatgagggagttgg 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
