BAC Information

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BAC

Clone NameMSMg01-263E22
Chromosome15 (Build37)
Map Location 31,962,505 - 31,962,900
singlet/doubletsinglet
Overlap genenone
Upstream geneDap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
Downstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962, Sdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263E22.T7 (MSMg01no263_e22.b1)MSMg01-263E22.TJ (MSMg01no263_e22.g1)
ACCAG405167AG405168
length755755
length of high quality
(start - end)		621 (43 - 663)510 (77 - 586)
definitionCHROMAT_FILE: MSMg01no263_e22.b1 PHD_FILE: MSMg01no263_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:11 2005CHROMAT_FILE: MSMg01no263_e22.g1 PHD_FILE: MSMg01no263_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTCCTTGATTATCATGCAATTCCCCCTGTGTTAAGTCCTCTTCTTTC
CCTGTACCGTGTAGTCCTTCTGCAGATGTCTCATAGTAATTCATTCTTAC
CTACTCGCCACCCCAGATTCTACTACTAACTGGCTTTTAGTGAGTGTTTT
AGTTTCTTCTCCTGTTGCTGTGATAAACTACTCTCTGACAAAAGCAACTA
AAGGAAAAAGGTTTATTTTAGCTCTCTATTCAAGGTATACGTCACGATGA
CAGGAAGTCAAGGCAATAGGAACCTGAAGCAATTGGTCACACTGTATCTG
AAATTAGAAGAAAAAAAGCAATGAATGCATGCAGGCTACTGCTCAGCCTG
CTCTTCCACTCATATACAGGCTGGATTCCTCTGGCTAGGGAATGGCATCA
CCCACAGTGGGAGGATCAGTGAACACGTCCCAGGTAATTCTATCTCCTGT
CATGTTGAATTTAACCTCAACCATCACTGTAAATGCCAGTTATTATGTGG
TAGCAAATGCCGCAAGCTGGGACATTGCTTGTGTGGCCTTTGCTTTGTAG
GCGACCTGTTTGCTTCACTATGAGTCGTCATTCTAGGTCCCTGTCAGAGA
TACTCTGTCTTCACTACAGAGAAGGAAGAATAACCAAAGAACCTGGAAGG
NGATGTGGAAGGATTGCTATTCGTTTCCAACACCTTGCTGCCTTCTCTCA
TACCG

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCTCAAAACTCTCCCTTATAT
TGAAAGATCCTGACAGAATGTAAAAGGTCACAGAAGCCCTGAAATTGGCA
AGACAGATGTTACTGTTAGCAGAACTAGCTTCACTGATTTAGAAAAATAG
AGGTGCACAATGCTCTGGCCACTCCTTGAACCTGTGTGTCTGCCAATGTT
TTGACCATTCCTTGAACCCATGTGTGTGCCCACTGATGAAGCCCATTGCT
AGGTGTTTGTGATATTGCTTACTGAGAAAGAGTCAGAAAATCTCCCCAGC
AACCACAGCTTCGCCAATCCTGAGTTGCTACACCTGCACCAGACTCTTTC
CTTGTACCCCTCCCATACCCATTCCTTGAGAATAGACATTGTTTAGATCT
GGAAATCCCCTTCTCCTTTCTCCCTTGAGGGCCTATTAAAAACTGGGACC
TCTTTCACCTCTAGGTCAACTCTTCTACCCCTGCGTGGGATATGAGTCGT
CCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTCATGTGGCTTATATTAA
GTTTGGTCTATTGCGAGTTCTTGGCTGCCTGCTTTTGTCTTGACCCTTGT
TACAGGCGTTTCCTTTTCACTTTTTTTCCACCTTTCTTGTCTCCCTTTCT
GCCTTATTCTTCCCACCACTTTCTATTTCCCTTTCCCTTTTTTTCCTTTT
CCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_e22.b1 MSMg01no263_e22.b1 CHROMAT_FILE:
MSMg01no263_e22.b1 PHD_FILE: MSMg01no263_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:11 2005
         (621 letters)



>mm_chr15_31961880_31962900
          Length = 1021

 Score =  735 bits (380), Expect = 0.0
 Identities = 392/396 (98%), Gaps = 1/396 (0%)
 Strand = Plus / Minus

                                                                        
Query: 227  tagctctctattc-aaggtatacgtcacgatgacaggaagtcaaggcaataggaacctga 285
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tagctctctattcaaaggtatacgtcacgatgacaggaagtcaaggcaataggaacctga 962

                                                                        
Query: 286  agcaattggtcacactgtatctgaaattagaagaaaaaaagcaatgaatgcatgcaggct 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  agcaattggtcacactgtatctgaaattagaagaaaaaaagcaatgaatgcatgcaggct 902

                                                                        
Query: 346  actgctcagcctgctcttccactcatatacaggctggattcctctggctagggaatggca 405
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  agtgctcagcctgctcttccactcatatacaggctggattcctctggctagggaatggca 842

                                                                        
Query: 406  tcacccacagtgggaggatcagtgaacacgtcccaggtaattctatctcctgtcatgttg 465
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 841  tcacccacagtgggaggatcagtgaacacctcccaggtaattctatctcctgtcatgttg 782

                                                                        
Query: 466  aatttaacctcaaccatcactgtaaatgccagttattatgtggtagcaaatgccgcaagc 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  aatttaacctcaaccatcactgtaaatgccagttattatgtggtagcaaatgccgcaagc 722

                                                                        
Query: 526  tgggacattgcttgtgtggcctttgctttgtaggcgacctgtttgcttcactatgagtcg 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tgggacattgcttgtgtggcctttgctttgtaggcgacctgtttgcttcactatgagtcg 662

                                                
Query: 586  tcattctaggtccctgtcagagatactctgtcttca 621
            ||||||||||||||||||||||| ||||||||||||
Sbjct: 661  tcattctaggtccctgtcagagacactctgtcttca 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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