BAC Information

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BAC

Clone NameMSMg01-263H02
Chromosome15 (Build37)
Map Location 40,482,916 - 40,483,242
singlet/doubletsinglet
Overlap genenone
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013, LOC664872
Downstream geneZfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263H02.T7 (MSMg01no263_h02.b1)MSMg01-263H02.TJ (MSMg01no263_h02.g1)
ACCAG405264AG405265
length750774
length of high quality
(start - end)
331 (45 - 375)---
definitionCHROMAT_FILE: MSMg01no263_h02.b1 PHD_FILE: MSMg01no263_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:21 2005CHROMAT_FILE: MSMg01no263_h02.g1 PHD_FILE: MSMg01no263_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGTCATACCCTTAAGTCAAAGGCAGATAAACTGTACTCAATTTC
TGGTTATGATACAAAGGCAAACATTCAGCCTTTTATTGTTACTTTTTAAA
TAAAGAATAAAGCTTGCTGTCTAATAAAATGTGGTCTGTAAGTTTGCTTT
ATCAATTTCTTGGTCCCTTGGAGAAAAATAAAGTCAAATTCCAGAACAAG
AGAGGGATGAATGCATTCCACTTATTCCAAGAGTTGCATTTCTGTATTGT
GCCAAAATATTTAGAATTTTTTTGCAGAGAAATTTGTACCTTCTACCTTT
CCTTCCTTAAATATTTCATCAATCACCCACTACCAATATTTATGACTTGC
AAGAAGTACTTCAGGGTTTCTGTACCTTTTCTATAAACAGTATTGTAAAT
ATTCATATGTATACAAATGCAAAACTGCTACATTTGTAGGCTTTCTTGAT
AAAATACAAGATATTTGGGCAAGTGGACAATTTGAAATATAAATAAAGAA
AATATTCAATGAAAGAAAATAGAACAAACACAAGATATCCAGTTAAGTTT
GAATTTCAGATAAGTTGCAATCATGATTATGGTAAGTATGTACCAAACAG
TGTGTGGAGCACACTTATCCTGTATAATGTAATGCCCAGTCGTTTGACTT
GTGTTTAACTGACCACTTTGTAAATTAATTTTAAAAACTATAGCCTCCCT

CAATGATAGGGGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCGCGATTCCTCACATTACCTTATAAAATACATT
CTGATTTTTAATTTGTTATTCTGTATCTCTGAACATATTCAAAGATCAAA
CTACATAGAATTAGACCACATTTGGAAGAAGTTCTTTGATATAAGAATCC
GTACTCAGACACATGAATATAGAAAGGTCTCCAGAAGTATTGTAAATAGT
TAGAGGACGTCTTCATTCCTATGATTCCACAGGTAGAAGACAAGCCAAAA
GATTAATAGAACAAGTACTACTGTATCCTGTAGCTGGGGCTCTGACAACA
AATTTTTGAGAACTATCACTTTAAAATTCTACATGCCAAACCTATGTATG
ATTTATGCTTAATAGAACTGAAATTCCTCTTACAAAAATGCATGCCGAAG
AAGATTAATTATTTATCTCAAATACAGAATATGGAATTGAGATTTAATAA
GGAGCAGTATCCATGATTGCATAGGTATATCCATAACGCTTATGATTGAC
TTGAAATACATTTTTCTATATTACATAATTCATAATATTAGATGATACTT
CAAAACAATTGATATCAAATATCTGAAAAGACAAGCAAACCTCCTATGGT
GCTACAGTGTGACTTTGTTTATTCTAAAGTCTTTTGAAGATTTTCGAAGA
CTTACTTTTACTTTACTACTTTAGTCCTTTTTTTAGTAAAATTTACTTGT
TTGTACTCCCCCCCCATCCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_h02.b1 MSMg01no263_h02.b1 CHROMAT_FILE:
MSMg01no263_h02.b1 PHD_FILE: MSMg01no263_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:21 2005
         (331 letters)



>mm_chr15_40482712_40483442
          Length = 731

 Score =  609 bits (315), Expect = e-179
 Identities = 324/327 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtcatacccttaagtcaaaggcagataaactgtactcaatttctggttatg 64
           |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtcataatcttaagtcaaagacagataaactgtactcaatttctggttatg 264

                                                                       
Query: 65  atacaaaggcaaacattcagccttttattgttactttttaaataaagaataaagcttgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atacaaaggcaaacattcagccttttattgttactttttaaataaagaataaagcttgct 324

                                                                       
Query: 125 gtctaataaaatgtggtctgtaagtttgctttatcaatttcttggtcccttggagaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctaataaaatgtggtctgtaagtttgctttatcaatttcttggtcccttggagaaaaa 384

                                                                       
Query: 185 taaagtcaaattccagaacaagagagggatgaatgcattccacttattccaagagttgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaagtcaaattccagaacaagagagggatgaatgcattccacttattccaagagttgca 444

                                                                       
Query: 245 tttctgtattgtgccaaaatatttagaatttttttgcagagaaatttgtaccttctacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctgtattgtgccaaaatatttagaatttttttgcagagaaatttgtaccttctacct 504

                                      
Query: 305 ttccttccttaaatatttcatcaatca 331
           |||||||||||||||||||||||||||
Sbjct: 505 ttccttccttaaatatttcatcaatca 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)