BAC Information

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BAC

Clone NameMSMg01-263M08
Chromosome15 (Build37)
Map Location 12,494,575 - 12,494,877
singlet/doubletsinglet
Overlap genePdzd2
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream geneLOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263M08.T7 (MSMg01no263_m08.b1)MSMg01-263M08.TJ (MSMg01no263_m08.g1)
ACCAG405502AG405503
length736775
length of high quality
(start - end)
320 (46 - 365)247 (80 - 326)
definitionCHROMAT_FILE: MSMg01no263_m08.b1 PHD_FILE: MSMg01no263_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:47 2005CHROMAT_FILE: MSMg01no263_m08.g1 PHD_FILE: MSMg01no263_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATCAGGTGCCTCACAACTGCCTGCAATTCTAGTACCAGATGAC
CTGACACCCATTTTTGGACCCATCCGCACCTGCACTCACATGTGCATGCA
CCCCACCCTGACACATACTTTTTTAAAAAATAGAAAAATGACTATTTGGA
AAATGACTTCTTTGGATGCATGGGAAAGTTCAAGGAACACTATAAATATT
CACAGCATACGCAAGGTTCCTATAATTAAGCCCGCAGGGACCACCACCCC
TCAAGAAACCATCACAACCAAATGAACTTCTTAGGAATAAAAACTATATT
TCTCTTTGTTCCCTGATTTTTCACGCCCCACGGCTCCCTCTTTGGGGCAG
TAGATCTGAGTTCTAAACCCCGAACTTGATCATGGTTACAGCATCAATAT
TAAAACCTGTGGCCTTTGTTTACAGAATGTTCCCTTTGCACTATTATTTA
TAACTTAAGAGCCAAACGCCCGTCTTCTCCAGCCACTGCTGAGGTCAGAA
TCATGGAAGTGCATAGCGGTAAACATCTGTCTTAGCCGCTCCAAACTCTC
CAGCCTTCTTAAGGAGATCCGCGATGATAAATGAAGACGCTGGCAGCCTT
GTGTACAGAACGGTATCTTCATAGATGACCTCGGTCGAGAAGGCCATGGA
ATGAAAGCACATGCCTTAACCTCACATGTGATGACN
NCCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCGGAAAGCTTTGAGTGTT
TAGTTAATAGGAAGAGCGTAAGTGGGCTAGAGAGAAGTGCTGTGTGTAGA
GTCCTGTTGTCCAAGCATGAGAACACAAGTTCAGATGGCCAGCACCTATG
TAAAAGCCTGGGGAGATGGCAGTACCTGTAACCCCAGGGCGAGGGACCGG
AACATCTGAGGGAGTGGAAAGAGGTGGGTCTTAAGGATCACTGATCTCTG
GGTTCAGTGAAAAATTCTGCCTCAAATACTCTTGTGAAGAGCAATAGAGG
AAAACACTAGATTTTGATTTCTTTTCTCCCCCCCCCCCCCCCCTTATATA
TAGTCATACATGAACTCTTACCCCCCCCACACAAAAAAAAACACACTCAC
ACTCGGTTGCTCTGATATAGAGAAAGAGAGAGAGACAAATAACAGAATAT
TTATTCTCTTGGTTTGATCTTTTACACCATATACAGTTTTTATTTGGATT
GCAGTTTATTATTTTTTCTGCCCTTCTTTTCCTGCCTTTTCGCCTTCTTC
CCTTCCTTTTTTCTTTCCCCCCCTTTTTTTGTTCTATTCCCCCCTTTTTC
CCCCTCCTTTTTCTTTTTCCCCTTTCTTTCCCCCCTTTTTTGTTTCTTCC
ACCTTTTCTTCCTTTTTCTTCCCTTTTCTCATTTTCCCTTTCCCTCTTTC
CTCTCTTTCTTTCTTCCTCCCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_m08.b1 MSMg01no263_m08.b1 CHROMAT_FILE:
MSMg01no263_m08.b1 PHD_FILE: MSMg01no263_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:47 2005
         (320 letters)



>mm_chr15_12494372_12495091
          Length = 720

 Score =  474 bits (245), Expect = e-138
 Identities = 294/317 (92%), Gaps = 14/317 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatatcaggtgcctcacaactgcctgcaattctagtaccagatgacctgacacc 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatatcaggtggctcacaactgcctgcaattctagtaccagatgacctgacacc 263

                                                                       
Query: 64  catttttggacccatccgcacctgcactcacatgtgcatgcaccccaccctgacacatac 123
           ||||| |||||||||  |||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 264 catttctggacccatgggcacctgcactcgcatgtgcatgcaccccaccctgacacgtac 323

                                                                       
Query: 124 ttttttaaaaaatagaaaaatgactatttggaaaatgacttctttggatgcatgggaaag 183
           ||||||||||||||| ||||||||||||          |  ||| |||||||||||||||
Sbjct: 324 ttttttaaaaaataggaaaatgactatt----------c--ctt-ggatgcatgggaaag 370

                                                                       
Query: 184 ttcaaggaacactataaatattcacagcatacgcaaggttcctataattaagcccgcagg 243
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttcgagcaacactataaatattcacagcatacgcaaggttcctataattaagcccgcagg 430

                                                                       
Query: 244 gaccaccacccctcaagaaaccatcacaaccaaatgaacttcttaggaataaaaactata 303
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 431 gaccaccacccctcaagaaaccatcacaaccaa-tgaacttcttaggaataaaaactata 489

                            
Query: 304 tttctctttgttccctg 320
           |||||||||||||||||
Sbjct: 490 tttctctttgttccctg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)