BAC Information

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BAC

Clone NameMSMg01-264J11
Chromosome15 (Build37)
Map Location 51,182,823 - 51,183,131
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264J11.T7 (MSMg01no264_j11.b1)MSMg01-264J11.TJ (MSMg01no264_j11.g1)
ACCAG406096AG406097
length719712
length of high quality
(start - end)
312 (46 - 357)193 (68 - 260)
definitionCHROMAT_FILE: MSMg01no264_j11.b1 PHD_FILE: MSMg01no264_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:49 2005CHROMAT_FILE: MSMg01no264_j11.g1 PHD_FILE: MSMg01no264_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCCAACAGAAAGTTCAGCCTTAATTGCATATTTTATCATCCT
GAGCAAGGACTATACTAACTGCTGCCATAATACCTTTACAATCCTGACTC
TGTCTTATAAGTACAAATTTCAGGGACTGAAAATAGTTTCTGCTTTTTCA
GACATTTCCATACTCATAGGGTAGACTCTATTCACTAAGGAGTCATGATA
CCCCATAAGGTACAGAGGATGGTTGTCACCTTGAGACTCTTTCCAAGGAT
AAGTTTCACATATCCCAGCTTCTGGTTTAGGACTTAATCATCATGCAGAG
TCTGCCTCTGTTATTACCGCCCCCACCGCACACCTTCCCACACCACAAGA
ATGGTAGCCATATTGCTATTTCTCCTATGTGTGATACACCCTTAGTCAGA
CATGCATATCTTATCATTCATTGTGGATGCCATACTACAGCTTCTCTTCC
ATCTTCTTTTTGGCTTTACTAGTTTCTTTCTCAGTGACAATTGTGTTGTG
TGACTTTTTCTGGTGAGGCAAGGAAAAACACAAATTGATCCTAGATGGGG
CAATAATGAAAGAATGAAGAAACAGTTCCACTCCTGACTAGCCTAGTAAG
TTGGGAGTTTGCTGGGATTACTTACTCGAGAGTAAGCAACTCAAAGGCAG
CTTCATCACCATAAGCCAC
TTCCCAGGAATTCCAGAAAACCACAGCTAGTCAAAATGGAAAGTAATGAA
GAGTTGTGTATGTCCCGTCCGACTGGATATATCTAGAAAATATTCCTGAA
CCCAAGACTCAAGAAACTCTGAAGAAGAAGGTGGGGGGTAGGGTGTAGAA
AATGTTAAGAGCCAGAGGAACAAGGAATTTGATATAAGATTGTGTCTAAT
AGAAATGTCAGAAGCTACATTTTGGAAATCTCACTAATATGGTTTCCCAA
ACATGAGTTGAACTTTTTATGACACCAATATGCGTGCTAATTGGGACTGA
ATGTTTTGTTTTTTACACCCCCCCCCCTCCTGGTTTTTATAAAGGCTGAT
TATGCCTTCCCCAGGTATAGGGTATGAATATACCTTACCAAGGCTCATGC
TATGATTATATAGGACAATTAGTACTTCCCTCATTCCATCATAAGACTTC
TGGTATGATCTCATGTCTTCATGCTTATTCCTCTATGTCTTTATTCTCTG
ATCCATCTCAATGACTCCTTTTTTTATTTAATTTTTAATAACCTATTTCT
CTCTCCTTACCTGTTTTTTAAACAATCATTTTTTTTTTTTCTTTTATAAT
TTTTTTTTATACTTTTAGGTTATTTATCCTCACCTACTCCTCCTTCTTGT
TTTCACTTACTACAATACGCTTTTTGCTCCTTTTTTCACTTTTATAATTT
CTCTTGTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_j11.b1 MSMg01no264_j11.b1 CHROMAT_FILE:
MSMg01no264_j11.b1 PHD_FILE: MSMg01no264_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:49 2005
         (312 letters)



>mm_chr15_51182620_51183332
          Length = 713

 Score =  565 bits (292), Expect = e-165
 Identities = 305/310 (98%), Gaps = 3/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttcccaacagaaagttcagccttaattgcatattttatcatcctgagcaagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaattctttcccaacagaaagttcagccttaattgcatattttatcatcctgagcaagg 453

                                                                       
Query: 64  actatactaactgctgccataatacctttacaatcctgactctgtcttataagtacaaat 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 452 actatactaactgctgccataatacctttacaat-ctgactctgtcttataagtacaaat 394

                                                                       
Query: 124 ttcagggactgaaaatagtttctgctttttcagacatttccatactcatagggtagactc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttcagggactgaaaatagtttctgctttttcagacatttccatactcatagggtagactc 334

                                                                       
Query: 184 tattcactaaggagtcatgataccccataaggtacagaggatggttgtcaccttgagact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 333 tattcactaaggagtcatgataccccataaggtacagaggatggttgtcaccttgtgact 274

                                                                       
Query: 244 ctttccaaggataagtttcacatatcccagcttctggtttaggacttaatcatcatgc-- 301
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  
Sbjct: 273 ctttccaaggataagtttcacatatccaagcttctggtttaggacttaatcatcatgcaa 214

                     
Query: 302 agagtctgcc 311
           ||||||||||
Sbjct: 213 agagtctgcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space:   213312
Effective search space used:   213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)