BAC Information

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BAC

Clone NameMSMg01-264M19
Chromosome15 (Build37)
Map Location 12,229,329 - 12,375,718
singlet/doubletdoublet
Overlap geneLOC100039846, Golph3, Pdzd2
Upstream geneAdamts12, Tars, LOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12
Downstream geneLOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264M19.T7 (MSMg01no264_m19.b1)MSMg01-264M19.TJ (MSMg01no264_m19.g1)
ACCAG406245AG406246
length705753
length of high quality
(start - end)
119 (98 - 216)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no264_m19.b1 PHD_FILE: MSMg01no264_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:05 2005CHROMAT_FILE: MSMg01no264_m19.g1 PHD_FILE: MSMg01no264_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,229,329 - 12,229,447)(12,375,436 - 12,375,718)
sequence
AGGAGAATCCTGACCGGCGCGGAATTCACTCTGTATCCTGACTGGCCTTG
AACTCAACAGAGGTCTGCCTGCTTCTGTTCCCCCAAGTCCTGCGATTAAA
GGGATGTCTCCTCCCCCTTTTAAATGACATTTCAATGTAATTATTGTATT
ATGGGGAGGAGGCCATGTGTGTACCATAGTGTCTGCATGGAGGTCAGAGG
TCAGCTTTCAGGAGTCAGTTTTCTCATTCTATCACGTGTAAATCAGGTTG
TCAAGCCTGGCAGGGGGTACCTTTACCCTCAGAGCTGCCTACCTTCCCTG
GGCCAGCAGTTGGAANCAACCCCGGTTTTTTTTTTCCCAANAACGAACCC
CCGTTGGATATGGAAGATATTTGGGGGGNNNNNNCCCCACAAACCGAGGT
AAAAAGTGTGGGGGGGGGGTGTGGATGACCTANGCTTGTTGCCCGNGTGC
GGTCCCCCCGGCTTACCTTTCTTCGTTTCCTTGCTTGCCTGTTTGCCTTT
CGTTGCGTGGCGGTTCCTTCTCTTCCTGTTTTTTGCCCTCGCTTCCTCGT
GTCCTTCCGTTGTNCGTTTTTGTTCCTTTTTTCCTGCTGCTCCCTGCGNG
CCGGCCCGCTCTTTTTTTTTTTTTTTGNTGCCCCCCGCCCCGGCGCTCTC
CGGTTTTGCGGCTTCTTTTTCTTCTCCCCTTTGTGCTTTTTTTGTTTTTT
TTTTC
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAAACTAAAAATTAGATACT
CGGCCTACACCATGCATTTTCTAACGCTCCACGTGTGGACAGTGGTTCCC
TATAGAATGACACAGACCGAACATTTCCCTTATTCTAGAAGGTTTTATGG
GACAGCACTGACAGCCAGACTTCGGTCTAGTTAATAGAGGCCTTTTCTTC
TGTGCTGATTTGTGATATTTGGTGACAAGAGACGGATGCCTGGTCTCTCG
TGACAGTGCTACTCTCCCGTGTCTATGCTGTGTGTCTGTCAGCATCCTTC
ATGCATGCTCTTTTTTTCTTCCCCCCCCCCCGCCTGGCCGGATATGGAAG
ATGGAACTGCTCAAAGAACCCCATGGGCTGGAAATTCAGGTTAGTGGAGG
CCGAGGATCAAAGCGCTCACCTCACGCTATCGTTGTCACCCAAGTGAAGG
AAGGAGGTGCCGCTCACAGGTGACTAGATAACTCTTCCCCCATCCCTCTG
CCCCTTGCCTTCCTCCTCCTCTTCCCTCCGGTGCTGGGTGCTAGTGTCTT
TCGCTTGATCAAAGCTCTCGTAATTAAAAGATTTGTGGGAGCGCGGGAGG
GAAACAGACAAGAGCCGCTCTCACTGGGCATGCCTCTGAACACAGGAAGT
GGCTCATAAGGAAGGATGCTTATGATATTCTAAACCGTGGAACAGAGATT
TGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_m19.b1 MSMg01no264_m19.b1 CHROMAT_FILE:
MSMg01no264_m19.b1 PHD_FILE: MSMg01no264_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:05 2005
         (119 letters)



>mm_chr15_12229129_12229647
          Length = 519

 Score =  223 bits (115), Expect = 4e-63
 Identities = 118/119 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagggatgtctcctcccccttttaaatgacatttcaatgtaattattgtattatgggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagggatgtctcctcccccttttaaatgacatttcaatgtaattattgtattatgggga 260

                                                                      
Query: 61  ggaggccatgtgtgtaccatagtgtctgcatggaggtcagaggtcagctttcaggagtc 119
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggtcatgtgtgtaccatagtgtctgcatggaggtcagaggtcagctttcaggagtc 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no264_m19.g1 MSMg01no264_m19.g1 CHROMAT_FILE:
MSMg01no264_m19.g1 PHD_FILE: MSMg01no264_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:05 2005
         (287 letters)



>mm_chr15_12375103_12375789
          Length = 687

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaaactaaaaattagatactcggcctacaccatgcattttctaacgctccacgtgtg 60
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 616 catgaaactaaaaattagatactcggcctacaccatgcattttcaaaagctccacgtgtg 557

                                                                       
Query: 61  gacagtggttccctatagaatgacacagaccgaacatttcccttattctagaaggtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacagtggttccctatagaatgacacagaccgaacatttcccttattctagaaggtttta 497

                                                                       
Query: 121 tgggacagcactgacagccagacttcggtctagttaatagaggccttttcttctgtgctg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 496 tgggacagcactgacagccagactttggtctagttaatagaggccttttcttctgtgctg 437

                                                                       
Query: 181 atttgtgatatttggtgacaagagacggatgcctggtctctcgtgacagtgctactctcc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 436 atttgtgatatttggtgacaagagacggatgcctggcctctcgtgacagtgctactctcc 377

                                                      
Query: 241 cgtgtctatgctgtgtgtctgtcagcatccttcatgcatgctc 283
           | |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 376 catgtcaatgctgtgtgtctgtcagcatccttcatgcatgctc 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)