BAC Information

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BAC

Clone NameMSMg01-265B08
Chromosome15 (Build37)
Map Location 30,735,743 - 30,735,956
singlet/doubletsinglet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265B08.T7 (MSMg01no265_b08.b1)MSMg01-265B08.TJ (MSMg01no265_b08.g1)
ACCAG406448AG406449
length869964
length of high quality
(start - end)
219 (95 - 313)---
definitionCHROMAT_FILE: MSMg01no265_b08.b1 PHD_FILE: MSMg01no265_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:28 2005CHROMAT_FILE: MSMg01no265_b08.g1 PHD_FILE: MSMg01no265_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGNCCTTTTTTTTTTTTTTTTTATATCCNCCCCCCTTTTTTTTTTATAT
CTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGGGCGTAAGAAGGTCACTTGGAATGGGAGGCACAGCATGGGTG
ACCAAGAGTGGCATGTCTTTGATTAACAACAGTGAAAAATACATTACATT
TTAGTGTTCTATTTGTTGAAAGAAAATTATAATCTTGTAGAGATGAATGC
AAGAAACTATGCTTTGTGATATGTTTCCAGATACATGTACTTTTTGCTGC
CCACTGACATGGGGTGTGGGGGACTTAGGTATTTAAATTGAAAAGAGAAC
AAAGCAGCTAATTAATATCCAGACCCGTACATGAAGCGATCTGGAATGCT
GCCGTGTGTTGTGTGTATTTTTTCCCTGTCCCTCGCCCCCCCGCCACTTC
TTCTTCCTTTCTTTAGACATCCCCCCCACGAGAGAATGAAAAGATGGTAC
CTCCACCATTTAATTTTCATATTCTGTATAATGCATTCATCCCCCAGATA
TGCTAGGACACCTGTCCAGCATCCTGTGCGCTCTCTCCATGTTGCTCCGC
CTGCAGTTCTCTAATTTGAATATCCGTATCCCACCTACCCCCTAAGCCCT
GAGTTCCCGGGTTCTCGTATGTATCAATGTTATTGACTTTCATTTTGTTA
CTTCCAACCTCGCCTTTATACTTCTAGTTCTACCCCTCTTGCCCTTTAGT
AAAAATATCAAGATACTGATAATAATGGTATTTAACTTACACATATCACT
TGACCTGTCTATTATTCTTATCCTAGCAATATCGAAGCTCCCTAACATAT
AACCACCACATATAATAAA
TTAAAATTNNNNNNNNNNNNNNNNNNNNTTTTNNNNNTTTCCATGCAATG
GTANNCCGNCGCCCCCTGTCCCCCCAATTTTAGTGGCCCCCTTTTAANTT
CCCCCGCAATTCCCCGGGTTTTNNNCCTTCCCCCCCCCCTGGTTTTTTTT
TCCCCAAAAAAATCCTTTTTTTTTCTNNNNTTTTTCNNNNNNNTTTCTCC
CCTTTTTCCCCCCTGTTCCCCCCCNCCCCCCCCCTTCCCCTCTTTTTNAA
AACCCCTTTTTTTCTTCCCCCCCCCCTCCCCCTCTCCTTTTTAAATTTTT
TTTTTTTTTTNTTTTTTTTTCCTTTCCTTTTTCTTTTCCCCCTTCCCTCC
CCCCCTTTTTTTTTTTCTCCCCCNCCCTTTTTTTTTTTTCCCTCTTNTTC
TTTCTTTTCTCNNCCTCCTCNNNNNTTTTTTTTTTTTTTTTTCCCCCCCC
CCCCCCCCCCCCCTTTTTCTCTTCTCTCTTTTCTCTTTTTTTTTTTCCCC
CCCCCCCCACCTTCCCTCTTTCTTTTTTTTTTTTTCTCCTTTCCTCTTTT
CTCTTTTTTCTTTCTTCTCTCTCCTTTTTTTCTTTCTTTTTCTCCCTTCT
CCCCTTTCTTTTTTTTTTTTCTTCCCTTTCATTTAAACGCGCAAGTCCTA
CTCCTTCTTATNTTTCTTTTTTTTTTTTTNTNNTCCTTCTTTTTTTTTTT
CTCTCTTCTTTTTCCCTCTCTATATCCTCAATAATAAAGAGTATTTCTTA
ATCCNCTCTCTCTTTTTCTCTTTTTTTTTCTTCTCTCTTTTTTTCCTCCC
TCTCTCTCTCTCCTTCTTCTCTTCTTTTCCTTTCCCCTCCCTTTTCTTCC
CTTCTTCTTCTCCCTTTTCTTCTCCTCTTTCTCCCCTCCCCCCCCTCCTC
TTCCCCATTAATGAAACTCTGACCCCTTCTTTTCCTTCCCCCATTTTATA
TGGTTCATGTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_b08.b1 MSMg01no265_b08.b1 CHROMAT_FILE:
MSMg01no265_b08.b1 PHD_FILE: MSMg01no265_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:28 2005
         (219 letters)



>mm_chr15_30735540_30736156
          Length = 617

 Score =  375 bits (194), Expect = e-108
 Identities = 210/216 (97%), Gaps = 2/216 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgggggcgtaagaaggtcacttggaatgggaggcacagcatgggtgaccaaga 63
           |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggaattctaggggcataaaaaggtcacttggaatgggaggcacagcatgggtgaccaaga 358

                                                                       
Query: 64  gtggcatgtctttgattaacaacagtgaaaaatacattacattttagtgttctatttgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gtggcatgtctttgattaacaacagtgaaaaatacattacattttagtgttctatttgtt 298

                                                                       
Query: 124 gaaagaaaattataatcttgtagagatgaatgcaagaaactatgctttgtgatatgtttc 183
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaaagaaaattataatcttgt--agatgaatgcaagaaactatgctttgtgatatgtttc 240

                                               
Query: 184 cagatacatgtactttttgctgcccactgacatggg 219
           |||||||||||||||||||||| |||||||||||||
Sbjct: 239 cagatacatgtactttttgctgtccactgacatggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 617
Length adjustment: 9
Effective length of query: 210
Effective length of database: 608
Effective search space:   127680
Effective search space used:   127680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)