BAC Information

Click to search

BAC

Clone NameMSMg01-265J10
Chromosome15 (Build37)
Map Location 90,493,473 - 90,648,590
singlet/doubletdoublet
Overlap geneCpne8, LOC100042462, LOC100042471, EG667682
Upstream geneLOC676575, Syt10, Alg10b, EG627342
Downstream geneTcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13, Lrrk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265J10.T7 (MSMg01no265_j10.b1)MSMg01-265J10.TJ (MSMg01no265_j10.g1)
ACCAG406811AG406812
length726765
length of high quality
(start - end)
317 (4 - 320)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no265_j10.b1 PHD_FILE: MSMg01no265_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:07 2005CHROMAT_FILE: MSMg01no265_j10.g1 PHD_FILE: MSMg01no265_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,648,284 - 90,648,590)(90,493,473 - 90,493,763)
sequence
GAGGATCCGCGGAATTCACTGCCAGACTTTGGGTGAGGTGCTTTGTCCTT
CTTTTTTCTTATCATCTCATCCAAATGTTTATCTTCCACTGAGCCCTTTT
CTCTCCACCCTTTTTCCATGCGAAAGGAAGCAGGTGTTAGGAAGCTCAAT
TCTCCTCTTCCAAACTGCCTCTACTCATTTAACTTTCTGTCAGTAGAACA
TAGCCTGATCTCTACAACCATGGAAACTCTGGCCAGTCAGAGCATCATCC
CAACCACTTTTGAAGCACCAATAAGTGTTTCTAATCTTTTCATGACTGTG
CCCAAATGGACCTAAAATGTTGAGTTTTATATAAGGCCCCCCCCCCACCA
GGTGTCTTAAACATATGGTTTCTTCGAAGGCCCCAGTAGTCAGACAGAAA
TCACTTTCTCTCCTCTAGAGATTCCAGTTCTTGCCTCTGTCTCCCTCCTT
GGGATTATCAATAGAAATTGGCCTTTGCTTTCCCTGGACTCCCTGCTATA
ATGCATCCTCAAGAGTTAAGATGAGTTTCATGCTGAGACCCTAGAGAAAA
GGAGGCTGGTGTTTTACTGCACACTGTCTGATGTCAATACTTAATGGTTG
ATGTTAAATTTGTCCCAAAGTTGCAAATTTAAATAGGCTGGATCTATTGT
GCTGGAAAAGAGCCACTGTGGCTTATGATACGGACTTCTTAGAATGGCTA
CAAGTAAGATTACTCTTACATAAAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATATATCTTATTGGTAAGAGGA
AGGAAATTATCCACATTAATAAGATTAACTCCTCCTCGGATGCTGGCTAG
TTATAGATGGTGTAGCTTGTGGCCACCCTAGAATGTGAACTTCCAACTAC
ATATCACACATTCTCTCACCACATTCAAAATAGAGAGACCTGATCCAGAA
AATTATTCAATAACTATATATATATTATATATGACTAGAAAAATATAAAG
AATGATTTAAATTAATGAGAATATACATATGCACATATTCTCATTAATAT
ATATATATAAGTATAGTTTTATATAACCACCACACATTGTGAAAATATAT
ATATATATATCCCCCAACAAAACATAAGCTAAAGAATTTTGGTTTTGAAA
CAGCATCTTACTATGTAGCCCTGGCAGGCCTGAAACTCTCTGTAGACCAG
GCTACCCTNCAAATCATAGAGATCTGCCTATTTCTAAGCTAAAGAATTTA
TCAAGCATCGTATAAAAGAAGAAATATGGTAACTCCATGAGTATATTATA
TAAAGTTCATCGTCAATAATGACCACTGAGAGCCAAATGAGGTACATAAC
GAGCCACTACCCTCCTGTGTAATGGACAATTCTTGAAGACTCTCGAAATA
AAAACATATTAAATGCTTATTTTTGTAGCTCCGAAAACCAAATAATGTGG
GTGATGAAACTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_j10.b1 MSMg01no265_j10.b1 CHROMAT_FILE:
MSMg01no265_j10.b1 PHD_FILE: MSMg01no265_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:07 2005
         (317 letters)



>mm_chr15_90648077_90648793
          Length = 717

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattcactgccagactttgggtgaggtgctttgtccttcttttttcttatcatctcat 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattcactgccagactttgggtgaggtgctttgtccttcttttttcttatcatctcat 455

                                                                       
Query: 68  ccaaatgtttatcttccactgagcccttttctctccaccctttttccatgcgaaaggaag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ccaaatgtttatcttccactgagcccttttctctccaccctttttccatgcgaaaggaag 395

                                                                       
Query: 128 caggtgttaggaagctcaattctcctcttccaaactgcctctactcatttaactttctgt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caggtgttaggaagctcaattctcctcttccaaactgcctctactcatttaactttctgt 335

                                                                       
Query: 188 cagtagaacatagcctgatctctacaaccatggaaactctggccagtcagagcatcatcc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagtagaacatagcctgatctctacaaccatggaaactctggccagtcagagcatcatcc 275

                                                                       
Query: 248 caaccacttttgaagcaccaataagtgtttctaatcttttcatgactgtgcccaaatgga 307
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 274 caaccacttttgaagcaccaataagtgtttctaatctttttgtgactgtgcccaaatgga 215

                  
Query: 308 cctaaaa 314
           |||||||
Sbjct: 214 cctaaaa 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no265_j10.g1 MSMg01no265_j10.g1 CHROMAT_FILE:
MSMg01no265_j10.g1 PHD_FILE: MSMg01no265_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:07 2005
         (291 letters)



>mm_chr15_90493273_90493963
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatatatcttattggtaagaggaaggaaattatccacattaataagattaactcctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatatatcttattggtaagaggaaggaaattatccacattaataagattaactcctcct 260

                                                                       
Query: 61  cggatgctggctagttatagatggtgtagcttgtggccaccctagaatgtgaacttccaa 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggatgctggctagctatagatggtgtagcttgtggccaccctagaatgtgaacttccaa 320

                                                                       
Query: 121 ctacatatcacacattctctcaccacattcaaaatagagagacctgatccagaaaattat 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacatatcacacatcctctcaccacattcaaaatagagagacctgatccagaaaattat 380

                                                                       
Query: 181 tcaataactatatatatattatatatgactagaaaaatataaagaatgatttaaattaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaataactatatatatattatatatgactagaaaaatataaagaatgatttaaattaat 440

                                                              
Query: 241 gagaatatacatatgcacatattctcattaatatatatatataagtatagt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaatatacatatgcacatattctcattaatatatatatataagtatagt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)