BAC Information

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BAC

Clone NameMSMg01-265K21
Chromosome15 (Build37)
Map Location 41,691,530 - 41,691,835
singlet/doubletsinglet
Overlap geneOxr1
Upstream geneZfpm2
Downstream geneAbra, EG432946, LOC432947, LOC100039268, LOC100039197, Angpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265K21.T7 (MSMg01no265_k21.b1)MSMg01-265K21.TJ (MSMg01no265_k21.g1)
ACCAG406878AG406879
length7541,472
length of high quality
(start - end)
315 (46 - 360)---
definitionCHROMAT_FILE: MSMg01no265_k21.b1 PHD_FILE: MSMg01no265_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:15 2005CHROMAT_FILE: MSMg01no265_k21.g1 PHD_FILE: MSMg01no265_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGATTCTATTGGATTTAATATATTAAGCAAGTAATACTATTTA
CATATTTGTAGCTTAATAGGGCATTATCATAAGTACAAAACTAAAACGTG
CATATTTCTTCAACATTGTGTCAGATACACTGTTTTACAGTTCTCTTGTT
CAGCCTTGTTGCATACCAACTACCCCAAGACATTTTTGTTTTGTTTTGTT
TTGTTTTGTTTCTTCTCAAAAGGAAAAAAAAATTGTTTTGAAATAAAAAC
GTGTTTTTTTTTAAGTGGTATATGTTATTAGTTACCATTAGCATCTGCTC
TTATAAAAGGTTAGNGTCNGTATCCACAACTANCGCAATTCAGTAGACTT
GGTGAATGTGCAAGCCCACCCCCAAGAAAAAACAAAAACGAAAAGGTAGA
ATAAACTAGCAATTGTATTCTTTCTTGTAGGAAACCAACAATAAGCCATG
TGGCAACAATTCGTCAGTTAAATTTCAGAGCTTCATGTTATGCAAAAAAA
TAAATCCTGCTGTTATACGTGACAGTGACATTGTGCTGAAAATTCAGCTG
TTCCACACAAATGTTGTATATCCTGTAAATTGATGTCTAAAGATAGTTTT
GTTCCTTAATAAAGTGTTGAATGTCAATGTTGCTAAAAACCTTTAATTAT
TCTGAAAATGATTTTACCATCCCATTTTGTTGAGCTCAACTATAATTTAA
TATA
TAATTGGGATGGGGGAGCGGCGAGGGTAGCAGGGGGAGAGGGGAAGAGAA
CNAGACGATGAGAGCTGATAGAGGAGGCAGGATAATGGGAGAGGGAGAGC
GGGAGGGCATGAGCGCGGACGCGGCGGAGGGAGCCGAGGGAAGGATTACG
GTGTAGAAGCGCACGCTGAAGACAGCGTGCTCGGCGGCCGAGGTACATCA
GAGGCCGTAACCGNTGTTCTCCATATCACTGCGTGAGCTCGAGGGATGTA
GCGTTCATGGAAGACTAACACGCGTGTGATGTATTTGTGTCTGATTTTAT
CTGTCTGTCTTCACGCTTATGCTGTGGGTGCGAGAGAACAAGACAAGGGG
AGGAGGGAGCGGCCTGAGAGTGCGTGAGCAATCATCTTATACGCAAACAA
GTATAGCGCGCGGGCGCTGGGGACCGGGCAGCGGAGCGGCGTGCCCACGA
CCGGGGCGGCTAGTTTATGCGTGCGCAAGACACATTATTACATAACATAG
ATATAATATATAAAAACACGGAGGCACTGCGTCGGCTAAATCTGTTATAG
AGCACCCGATCGCGGGCGCAAAGTAGAGAGGCCAAGACGCAAACATCAGA
TGAAGAACATGCTCTCAAGAACGTTAGTACGAATTAAATAATACGCGGAG
TCGAGCATGACAAATCTTCTATCAGGTGAAGAGCGTTCGGATAGCGCCGG
CGCTCTCCGAATTAGAATGTTGTGGATCTCTACACAATACTATAGCACGG
TGAGGAAATGCCAGGCGACGTTCGACCGTCTTCTCACAGACACGACAACA
GAGGACGATAGTGAATGTGATATAGAATGACAGCAGCAGCGCTTCATGAG
CCGTTACTATGACGTCTGCAGGTGACAGTACAGCTCGTGCAAATACTCTA
CCATCGATCTATATATCGATGCTCCATGAATCTACGTCGGTAACGAGGCG
AGAGGTGGTGTGAGCGCTCTATTCGCACTTATAATGATGTAGGAGTAGCG
CTGAGTGCGAGAGTGATGAGTGGCGAATATCGAGCAANAGACCAGCATCA
GTACGCGACCTGAGTATAGAATATTATGCGCGGCGGCAGCCAACCCCGAG
CGCGGCGCGCCAACATCGCTCGTCGGCGTGATTCAAGAATTCATAATTAG
ATACTGAGGACTACACATATATAACTATGTGACTCACCTACAGTCTCTGT
AAGATTATATAACTACACGACTACTATACTACTCAACATACGAGCTACCA
ATACACGCGTAGATCTGAGCTATGATGTCTCCACTCTCTGCGCCGCGTGT
GCGTGTGCTGACTGCGCACTCCGTATGCGAATACACACGCACGACATAGT
TAGATGCACACGATTGTACTCGGTATCATATCGTGTCGAGTGTGAATTAC
AGACACTCTCGCACGAGCGCGNGAGTCTATCGCGGTGATACAATTCCGCA
GATTTGCGAANCGCGACAGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_k21.b1 MSMg01no265_k21.b1 CHROMAT_FILE:
MSMg01no265_k21.b1 PHD_FILE: MSMg01no265_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:15 2005
         (315 letters)



>mm_chr15_41691327_41692041
          Length = 715

 Score =  565 bits (292), Expect = e-165
 Identities = 305/312 (97%), Gaps = 6/312 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatgattctattggatttaatatattaagcaagtaatactatttacatatttg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatgattctattggatttaatatattaagcaagtaatactatttacatatttg 263

                                                                       
Query: 64  tagcttaatagggcattatcataagtacaaaactaaaacgtgcatatttcttcaacattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagcttaatagggcattatcataagtacaaaactaaaacgtgcatatttcttcaacattg 323

                                                                       
Query: 124 tgtcagatacactgttttacagttctcttgttcagccttgttgcataccaactaccccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcagatacactgttttacagttctcttgttcagccttgttgcataccaactaccccaa 383

                                                                       
Query: 184 gacatttttgttttgttttgttttgttttgtttcttctcaaaaggaaaaaaaaattgttt 243
           ||||||||||||||||||||||||||||     |||||||||||||||||||| ||||||
Sbjct: 384 gacatttttgttttgttttgttttgttt-----cttctcaaaaggaaaaaaaa-ttgttt 437

                                                                       
Query: 244 tgaaataaaaacgtgtttttttttaagtggtatatgttattagttaccattagcatctgc 303
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgaaataaaaacgtgtttttttctaagtggtatatgttattagttaccattagcatctgc 497

                       
Query: 304 tcttataaaagg 315
           ||||||||||||
Sbjct: 498 tcttataaaagg 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)