BAC Information

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BAC

Clone NameMSMg01-265P03
Chromosome15 (Build37)
Map Location 23,772,390 - 23,772,614
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh18, LOC624863
Downstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265P03.T7 (MSMg01no265_p03.b1)MSMg01-265P03.TJ (MSMg01no265_p03.g1)
ACCAG407064AG407065
length849780
length of high quality
(start - end)
225 (183 - 407)145 (166 - 310)
definitionCHROMAT_FILE: MSMg01no265_p03.b1 PHD_FILE: MSMg01no265_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:36 2005CHROMAT_FILE: MSMg01no265_p03.g1 PHD_FILE: MSMg01no265_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAGATGAAAAAACAAAAAAGNNAACTTCCTCTTGCTNCCCCNNGCTCCTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGTTTCTTACACTCAAACATTCATGCTGGCAGTCTCTTCCCCTGTCC
CTCCCCTTTCTTTCNCTAGTACCCTCACAAAGTTTAACATAACACACAGA
AATGTACAGATCCATTCTTTCTAGACTTCAAGGCTGCTTCAGGTTTGGTC
AAGGATATTAAGTACTAACAAATACAATAAGAAAAGTGCATCTTCACAGA
AAATAAATTCTACATATGCATGTGTATATAGTGTATGTGTATGGTATGCA
TGTGTTCATATGTATGTGCTGTGTATGTGTGTAATATGCATGCATGTATA
TATGTATGTATTTTTTTATGCATGCACACACACACTATGTGTATGTATGC
ATGTGTGTATGTATCTATGAGTATGTATAGAAAAAAGAGACTGCATGTAT
ATGTGCGTATATTTGTATGTATCTAAAAATTCGGTCATGTGTGAGGAGAA
TTTGCATACAATAATGTTCTAAGATTATGTGTGTAGTGCGAGTATACATG
AAAGTTCCTGGAAAGATAACTGTTTTAACAAATATTAGGTTTAAAAACAC
ACTTACACCAGAAAAAAATTTTCTGATTACAGGCACAAAAAATCCTAAGG
TAATTTGTAAACCAAATTTAACTTTTGCGAACCAAAAACTCTACCTAGGG
TTTTTTTTAAAAAATCATTGTTATGTTCATAACACAAATGTAACGTTTAT
ATAAAACCCTCAACAAAAATAAATACTCTTGTGAAAAATAAATATATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCACATGGCTG
AGAAGCACCTGAATCAATGTTCAACATCCTTAATCATCAGAGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
AAAAAATTCAGGTGACAGTAGATACTGGCAAGGATGTGGAGAAAGAGGAA
CAGTCCTCCATTGTTGGTGGGATTGCACGCTTGTACAACCACTCTGGAAA
TCAACCTGGCGCTTCCTTAGAATATTGGACATAGTACTACCAGAGGATCC
CGCAATACCTCTCCTGGTCATATATCCCGAAGATGTCCCAACGAAAAAGA
AGGACCCATGCTCCACTATGTTCATAGCAGCCTTATTTATCATAGCCACA
AGCTGGAAAGAACCCCGATGCCCCTCAACAGAGGATTGGATACCAACAAT
GCGGCACCCTTACCCCACGGAGCACCACTCCGTTATCAACAACAATGAAT
TTGTGACATTCCTAGGCAAATGGTTGGACCTGGAGGACACCTTCCCTGAG
TGAGGCAACCCCGTCCCTGAATAAAACCCCCAAGATATGAACCTCCCTGA
TAAGTGGATACTACCCCCCCAACCTTAGGCAAACCCCAGCAATCAACATC
ATTATTTGCAAACCCCCCCGGCGACTGAACCAACAACCATCAACCTCCGC
CGGGAAAAACTCTTGCCCCCTTCCTTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_p03.b1 MSMg01no265_p03.b1 CHROMAT_FILE:
MSMg01no265_p03.b1 PHD_FILE: MSMg01no265_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:36 2005
         (225 letters)



>mm_chr15_23772291_23772915
          Length = 625

 Score =  420 bits (217), Expect = e-122
 Identities = 223/225 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaacataacacacagaaatgtacagatccattctttctagacttcaaggctgcttcag 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 tttaacataacacacagaaatgtacagagccattctttctagacttcaaggctgcttcag 265

                                                                       
Query: 61  gtttggtcaaggatattaagtactaacaaatacaataagaaaagtgcatcttcacagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtttggtcaaggatattaagtactaacaaatacaataagaaaagtgcatcttcacagaaa 205

                                                                       
Query: 121 ataaattctacatatgcatgtgtatatagtgtatgtgtatggtatgcatgtgttcatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ataaattctacatatgcatgtgtatatagtgtatgtgtatggtatgcatgtgttcatatg 145

                                                        
Query: 181 tatgtgctgtgtatgtgtgtaatatgcatgcatgtatatatgtat 225
           |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 144 tatgtgctgtgtatgtgtgtaatatgcatgtatgtatatatgtat 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)