BAC Information

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BAC

Clone NameMSMg01-267A24
Chromosome15 (Build37)
Map Location 14,471,836 - 14,472,153
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666708, LOC674819
Downstream geneLOC100040024, LOC100040033, LOC100040046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267A24.T7 (MSMg01no267_a24.b1)MSMg01-267A24.TJ (MSMg01no267_a24.g1)
ACCAG407886AG407887
length726746
length of high quality
(start - end)
315 (45 - 359)303 (444 - 746)
definitionCHROMAT_FILE: MSMg01no267_a24.b1 PHD_FILE: MSMg01no267_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:01 2005CHROMAT_FILE: MSMg01no267_a24.g1 PHD_FILE: MSMg01no267_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAATTACAGAGTTTATGCTCTCACTGGGACATGCGCTTCTTGTCTT
TTTTTTTTTTTTGTATTAGAATAAAGTTGTATCATTTCCCTCTTCTTTTC
TCCTTCCAACCCTCCCTTATGTCCCACCACGCTCTACCCCAAATTCAAGA
TCTCTATTTTCCTTGATTGTTGTTACATGAATACTTGTATGTGCACGTGT
ATTCAAATCATGACCTGCACAGTCTATACAATGTTACTTGCATGTCAATA
TTTCCAGAGATGACCACTGGTACTAGATAAAGAGTTGGTGTATTTTTCAC
TGGGAAATACTAATTGNTCTCACTGCCCCACCCTCTCAGTTGTTTATAAT
TTTTGTGCAGGCTTGGCCCATCATTTTACAAAAATTGTGATACACTTAAC
TTATCTAGGCCAAATTGCTTTTATTGAAGAAAACTAAGAAGTATATCATA
TTAGATAAATGCAGAAAAGTGATAAACCAGAGAAAAATATTAAAGAACAG
GATTGAAACCAGTATTGCTTTGAAAATAAAAATACATATTTGTGATTGTT
TTACTACAAATAATGTTAAATACATAAAATATATACTTAGTCAAATTGCA
TTTCTCAATATTATTCATCTCTTCTTGTTTAAGAATGTAATTGAATCTAC
TTATTAAAATATTAATATCTGCTTAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGATCCAAGGACATGATTTATAGT
AATAGTAATTAGACTAGTTAAATTACCCGATACTGTTATAAAAGACTTAA
TAAAATGTGCAAAACAGGAAAAAACAAAGAGGCTCCAAAGAAAACTGAAA
ATTACGGACGATAAAAGAAGATGGAATAATTCTGCTTTAGCCAAAAATTC
CATTTTCCTTATGTTCTAGCATATTAGTTGCAGGTAGTCATAAAGAGATA
TAGTAAAGATTTTAATTAATTTTGTATTTTTGGATATATATATATGTATG
TAAGAAAATATAATAGGTCATTTTTCATACCCCCACACCCCAGCACAACT
ACTGTGCTTAGCTGACATATTAGAAAACTGAATGTACAAGAATTAAGCTA
TACCATAGGTTATTATATATTTAGATGACAGATAGATAGATAGTTAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATATGCATATAGA
TACATATCAACACTCATTAAATTACCTTCTGGAAATATATACTAATAAGT
TCACAGACAGTTGTTTGGTCAGTTTGTAATAAATAAAACACAGTTGGGTA
CTCAGTCATAAATGGTAAGTCAACACCACACTGTTTCTACTAAAGCTAAT
GGGTTTTCATTTAATAAGTAGAAAAGGGATTCTAAGAATGAAAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_a24.g1 MSMg01no267_a24.g1 CHROMAT_FILE:
MSMg01no267_a24.g1 PHD_FILE: MSMg01no267_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:01 2005
         (303 letters)



>mm_chr15_14471523_14472225
          Length = 703

 Score =  534 bits (276), Expect = e-156
 Identities = 301/318 (94%), Gaps = 15/318 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagctataccataggttattatatatttagatgacaga----tagatagatagt----- 51
           |||||||||||||||||||||||||||||||||||||||    ||||||||||||     
Sbjct: 631 taagctataccataggttattatatatttagatgacagatagttagatagatagttgata 572

                                                                       
Query: 52  ------tagatagatagatagatagatagatagatagatagatagatagatatgcatata 105
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gatagatagatagatagatagatagatagatagatagatagatagatagatatgcatata 512

                                                                       
Query: 106 gatacatatcaacactcattaaattaccttctggaaatatatactaataagttcacagac 165
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 511 gatacatatcaacactcattaaattaccttctggaaatatatactaataagtccacagac 452

                                                                       
Query: 166 agttgtttggtcagtttgtaataaataaaacacagttgggtactcagtcataaatggtaa 225
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aattgtttggtcagtttgtaataaataaaacacagttgggtactcagtcataaatggtaa 392

                                                                       
Query: 226 gtcaacaccacactgtttctactaaagctaatgggttttcatttaataagtagaaaaggg 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtcaacaccacactgtttctactaaagctaatgggttttcatttaataagtagaaaaggg 332

                             
Query: 286 attctaagaatgaaagct 303
           ||||||||||||||||||
Sbjct: 331 attctaagaatgaaagct 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)