BAC Information

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BAC

Clone NameMSMg01-267I14
Chromosome15 (Build37)
Map Location 38,950,027 - 38,950,342
singlet/doubletsinglet
Overlap geneWdsof1
Upstream geneEdd1, Odf1, LOC382986, LOC667563, Klf10, Azin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32
Downstream geneLOC671215, Rims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267I14.T7 (MSMg01no267_i14.b1)MSMg01-267I14.TJ (MSMg01no267_i14.g1)
ACCAG408228AG408229
length746700
length of high quality
(start - end)
345 (388 - 732)316 (385 - 700)
definitionCHROMAT_FILE: MSMg01no267_i14.b1 PHD_FILE: MSMg01no267_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:38 2005CHROMAT_FILE: MSMg01no267_i14.g1 PHD_FILE: MSMg01no267_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGAGGCCAACCAAATGGCTAAGAAGCACCTGAAAAAATGT
TCAACACCCTTAATTATCATGGACCTGCAAATCAAAACAATACTGAGACT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAATTTCAGGTATCAGTA
GATGCTAGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGG
GATTGCAAATTGGAAAAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTAGACATAGTACTACTAGAAAATCCAGCAATACCTCTCCTGGGCA
TATACCCATCTTAAGTTGCTCCCCNNTTGCAAACCCGACACATACTCCAC
TATGTCCATCGCAGCCTTATTTATAATAAACAGAAGCTGGAAAGAACCCA
GGTGTCCATCAACAGAGGAATGGGTACAGTAAATGTGATACATTTACACC
ATGTAGTACTACTCAGCTTTTAAAAATGAATTTATGAAATTCTTAGGCAA
ATGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAA
AGAACACACATGATATGCACTCACTTATAAGTGGATATTAGCCCAGGAAC
TTAGAATACCCAAGATACAATTTGCAAAACACACAAAATTCAAGAAGAAG
GAAGACCAGTGTGGATACTTCTTTCCTCCTTAGATTGGGGAACAAA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTCAATACTTTCAAGTAAGGG
AGTCTTGCGCGCACCGGACTGGCCAGCAGTAACGATGCTGCAACAGGATC
CTTCTGCACATGTTTATTGGGAGAGCTTGATTGCAGAGGCAAAGAGACCC
TGAGCCCAGAACTGGTGCTGCTTATATAGGCCTAGGAGAGTTCATCATAG
TACTTGACTGGGTTCCAGATACTGTGCTGCGCATAGGAGTGCAACTGAAA
GCTGTGTTGGAACCCCAACCCATGTGAAAGGTCACATACCCAGTTGAATT
TGGTAGGACATGTTTTAGGAAAACTACCGCGCGTGCATGTATATAGAATC
TACTTGTACAGGACTACATATTTCATGATTTTCCCATAGTTTTGATAAGG
TTTGTAAGTGACTAGTGTACTTTTGTATCTTTCATAGTGCTTGGCAAAAA
ATAATATCACTAATTAAAGGCTTATTGAGTAACAGATTACATGATTTAGC
TGGGGCTTTCCACAGGAAGTAGTAAATGTGAATATGTTATTCAGAGCGAT
TGTTCTTATTTCAGTCCCAAGAAACTATGATCCCACTTTACATCCTTTTG
AAGTCCCACGAGAATATGTGAGAGCTTTAAATGCTACCAAGTTGGAACGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_i14.g1 MSMg01no267_i14.g1 CHROMAT_FILE:
MSMg01no267_i14.g1 PHD_FILE: MSMg01no267_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:38 2005
         (316 letters)



>mm_chr15_38949827_38950542
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatgtatatagaatctacttgtacaggactacatatttcatgattttcccatagttttg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 gcatgtatatagaatctacttgtacaggactatatatttcatgattttcccatagttttg 260

                                                                       
Query: 61  ataaggtttgtaagtgactagtgtacttttgtatctttcatagtgcttggcaaaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaggtttgtaagtgactagtgtacttttgtatctttcatagtgcttggcaaaaaataa 320

                                                                       
Query: 121 tatcactaattaaaggcttattgagtaacagattacatgatttagctggggctttccaca 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatccctaattaaaggcttattgagtaacagattacatgatttagctggggctttccaca 380

                                                                       
Query: 181 ggaagtagtaaatgtgaatatgttattcagagcgattgttcttatttcagtcccaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagtagtaaatgtgaatatgttattcagagcgattgttcttatttcagtcccaagaaa 440

                                                                       
Query: 241 ctatgatcccactttacatccttttgaagtcccacgagaatatgtgagagctttaaatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgatcccactttacatccttttgaagtcccacgagaatatgtgagagctttaaatgc 500

                           
Query: 301 taccaagttggaacga 316
           ||||||||||||||||
Sbjct: 501 taccaagttggaacga 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)