BAC Information

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BAC

Clone NameMSMg01-267K15
Chromosome15 (Build37)
Map Location 50,558,271 - 50,680,683
singlet/doubletdoublet
Overlap geneTrps1
Upstream geneLOC665160
Downstream geneLOC100039644, LOC100039662, Eif3s3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267K15.T7 (MSMg01no267_k15.b1)MSMg01-267K15.TJ (MSMg01no267_k15.g1)
ACCAG408320AG408321
length753716
length of high quality
(start - end)		324 (46 - 369)635 (73 - 707)
definitionCHROMAT_FILE: MSMg01no267_k15.b1 PHD_FILE: MSMg01no267_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:47 2005CHROMAT_FILE: MSMg01no267_k15.g1 PHD_FILE: MSMg01no267_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,558,271 - 50,558,586)(50,680,049 - 50,680,683)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTGGTTCCTTTCATCAAAGATCAAATCTAGGGAGAATATGAA
AATTGCTTCACTTGACCATCAACATGGCTCCATCAGCAAAGGAAACAAGA
ACACAGCTTCAATAGCCAGAATGCATATCCTGTGGGCATTTCCGATCAAA
GAGCTCCACCTTAACTAAAACCAAAATGTGCAGAAAGCCATGAGAAAATC
CAGAAAGATTAATGTAATTATTACCATGTGATCGATACCACTAGTTATAT
AACCTACTGTCTTCTGCAGTAAGCAGTACCAATTTGCATCTGCATGTGAG
TATCCGCACAAACTCTTGTTCATTGCCATTCCGCGTAAGTAGGTCTTGCC
CTCAATAGGAGCACTCTGCGCTTTATTCAACATTATATTCATAATGCCTG
ACCCAGATCTTAGCACAAAATAAACTCAGTAGCTGCTGAGTGGATTAGCA
AGAGAGGCAGTAAAAAGCTGGCTACTAATACTGGCCTTAGAATTCTCTAG
ACAAAATAGCTAGGACTTTACTTATAAGTTTTAATTTAACTCCATGTATT
ATTCTACTATAAAAAAGTAATTATTGCTATTTAGGGTGAGGTTTGATTTT
TTTTAGGCAGGTATATTTGCTTCAGGAGTTCTGTAATAGTCTAGATGGTG
AAAAATCTGTTTGATCATTTATATGCCTTGAAAACATTTGCACATCTATT
TAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAATTCTCTAAGGAGAGGCAAAAGGTGTGTC
CCAAACCAGTATCATTTTATGTGCCGGAACTCTTGATGTTATGAACGAGA
GCATCCTGTCTTCTAGGTCAATTTTGAATATAAGTGTATAAATATATACA
CACTCATATAAAGGTATAAGTACTTACCCCTGAGCTTGTAAATTTGTAAA
TATACGTAAGTGCATGCACACGCTCATGTGCACACAAACATGTCATTGAG
TTCTATCGGTTACTCCAGAATTTCTGGGCTCAGCTGATCTTTCAGCATCC
CGAAGCATGCCACTATACTTGGTTTGCAATAACATGGGTTTTGTTTACAT
TTATAGTTTAAATAATAACTAATGTTTTAGTTTTTTTTTTCTTAAAGTTT
TCCCCTTCGATGGTTAGCACTAAAATTGCCTTGTAATCTTTCACATGCAC
TCCCAAGGCTACCAGAGTCTCATCTGACAGACCAATACAGGCATCCTTAG
ATGCTGTCAGCGAAAGCAACATTTCAATGTCAAACATTAAAAAAAACATA
GTTAACCCATGTCCCAAATTACAAAGAAGGGCCCTAGNTTCTTTCATTTG
AGACTCTCATGGGCTGACCAGGAAAGGTACATATTCCTCTTCCTTTGCCA
TGTTGCCCTCCCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_k15.b1 MSMg01no267_k15.b1 CHROMAT_FILE:
MSMg01no267_k15.b1 PHD_FILE: MSMg01no267_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:47 2005
         (324 letters)



>mm_chr15_50558067_50558790
          Length = 724

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttttggttcctttcatcaaagatcaaatctagggagaatatgaaaattgcttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttttggttcctttcatcaaagatcaaatctagggagaatatgaaaattgcttc 264

                                                                       
Query: 65  acttgaccatcaacatggctccatcagcaaaggaaacaagaacacagcttcaatagccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttgaccatcaacatggctccatcagcaaaggaaacaagaacacagcttcaatagccag 324

                                                                       
Query: 125 aatgcatatcctgtgggcatttccgatcaaagagctccaccttaactaaaaccaaaatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgcatatcctgtgggcatttccgatcaaagagctccaccttaactaaaaccaaaatgt 384

                                                                       
Query: 185 gcagaaagccatgagaaaatccagaaagattaatgtaattattaccatgtgatcgatacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 gcagaaagccatgagaaaatccagaaagattaatgtaattattaccatgtgatcgataca 444

                                                                       
Query: 245 actagttatataacctactgtcttctgcagtaagcagtaccaatttgcatctgcatgtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actagttatataacctactgtcttctgcagtaagcagtaccaatttgcatctgcatgtga 504

                           
Query: 305 gtatccgcacaaactc 320
           ||||||||||||||||
Sbjct: 505 gtatccgcacaaactc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no267_k15.g1 MSMg01no267_k15.g1 CHROMAT_FILE:
MSMg01no267_k15.g1 PHD_FILE: MSMg01no267_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:47 2005
         (635 letters)



>mm_chr15_50679849_50680883
          Length = 1035

 Score = 1176 bits (608), Expect = 0.0
 Identities = 628/635 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctaaggagaggcaaaaggtgtgtcccaaaccagtatcattttatgtgccggaactc 60
           ||||||||||||||||||||| |||||||||||||||| ||||||||||||  |||||||
Sbjct: 835 ttctctaaggagaggcaaaagttgtgtcccaaaccagtgtcattttatgtgtaggaactc 776

                                                                       
Query: 61  ttgatgttatgaacgagagcatcctgtcttctaggtcaattttgaatataagtgtataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttgatgttatgaacgagagcatcctgtcttctaggtcaattttgaatataagtgtataaa 716

                                                                       
Query: 121 tatatacacactcatataaaggtataagtacttacccctgagcttgtaaatttgtaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tatatacacactcatataaaggtataagtacttacccctgagcttgtaaatttgtaaata 656

                                                                       
Query: 181 tacgtaagtgcatgcacacgctcatgtgcacacaaacatgtcattgagttctatcggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tacgtaagtgcatgcacacgctcatgtgcacacaaacatgtcattgagttctatcggtta 596

                                                                       
Query: 241 ctccagaatttctgggctcagctgatctttcagcatcccgaagcatgccactatacttgg 300
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctccagaactcctgggctcagctgatctttcagcatcccgaagcatgccactatacttgg 536

                                                                       
Query: 301 tttgcaataacatgggttttgtttacatttatagtttaaataataactaatgttttagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tttgcaataacatgggttttgtttacatttatagtttaaataataactaatgttttagtt 476

                                                                       
Query: 361 ttttttttcttaaagttttccccttcgatggttagcactaaaattgccttgtaatctttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttttttttcttaaagttttccccttcgatggttagcactaaaattgccttgtaatctttc 416

                                                                       
Query: 421 acatgcactcccaaggctaccagagtctcatctgacagaccaatacaggcatccttagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acatgcactcccaaggctaccagagtctcatctgacagaccaatacaggcatccttagat 356

                                                                       
Query: 481 gctgtcagcgaaagcaacatttcaatgtcaaacattaaaaaaaacatagttaacccatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gctgtcagcgaaagcaacatttcaatgtcaaacattaaaaaaaacatagttaacccatgt 296

                                                                       
Query: 541 cccaaattacaaagaagggccctagnttctttcatttgagactctcatgggctgaccagg 600
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 295 cccaaattacaaagaagggccctagtttctttcatttgagactctcatgggctgaccagg 236

                                              
Query: 601 aaaggtacatattcctcttcctttgccatgttgcc 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 aaaggtacatattcctcttcctttgccatgttgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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