BAC Information

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BAC

Clone NameMSMg01-267O21
Chromosome15 (Build37)
Map Location 64,083,969 - 64,084,638
singlet/doubletsinglet
Overlap geneDdef1
Upstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik
Downstream geneAdcy8, LOC268812, LOC100040790, LOC665836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267O21.T7 (MSMg01no267_o21.b1)MSMg01-267O21.TJ (MSMg01no267_o21.g1)
ACCAG408513AG408514
length999745
length of high quality
(start - end)
---670 (76 - 745)
definitionCHROMAT_FILE: MSMg01no267_o21.b1 PHD_FILE: MSMg01no267_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:06 2005CHROMAT_FILE: MSMg01no267_o21.g1 PHD_FILE: MSMg01no267_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCCTTCTCGCCTTTTTGTCTTCTCCTCGTCCTTTGCGTANTTTNTCN
NNNNCCCTCTCTATAATTTGCGGGGCGCTAATTACGAATCAATTATAGGG
GAGGAGGACCGGCGCGAATCTCCATCAGGTAGGCAGGTTTTGCATAATGT
CCTAACACTACCTTATGCTGTATCTCCTGCCTTCCCTCACGGCAGCTTCC
CTACCATGTGGGCGGAAACACTCATTAGCCTGTAACATCACTTACCTTGC
AAAATTTTGAGGGCCCTGGCGGGGCTTTGTTTTCTTGGGCTACAGATTCA
TTGCGAAAGAAGCTGCGGCACCAGTCAGCTAACCATACCGGAACTAGGCC
TATTTCTTTCCCCTACGCCTTGCGGTCGCCCAGGGATAGAGATGTGGATG
CCATAATTTCATCTGTAATTTATCTACCCTCTTTTTTTTTTTCCCCAGAC
TGCCGCCCGAGTGAAANACCGAAGCGGACGCATTTTTTGGTGGGGTTTCC
CCCCAAAACAAAGACCCCCTAATTGGTTTGTGTTGTGGTTTATGTTTATT
GGGGGGTTTTTTGTGTGCTTAAAAAAATTGTAATTGTGTAAAAATATGTG
GGTGGGTGGGGGGGGGCTTTTCCTTCCCCTTTTCTTGTCTCTTATCCGGT
TGCGCGGCGCTGGTTTCAGCCGTAGCCTTTATAATAGTTTTATTGCCGCC
TGTCTTTCGTACTTATCTCTCTCCGCGTCTCGTTCCCCTTCATTTTTTAT
CTTTTTATCAGCATCCGCCGGCCTCCTCCCATATCCGCCTCTTATTGTAG
TCCATCTGCCGCCGTCCGCTTTGTTTCTTTTGCCGGCCTCTCCTCTGCTT
CTGTCGTTCGCACGTCGCCGCTGTTCTTCCGTGCGTTGTTTTATATGTTC
CTTCCCGCGCATATATTTAATATGTGCCTTGTCGCGATCTGTACTACCGC
TGGGCTTCACCGCTTTCCCTTCACTTTCGCTTTCTGCCCTCAGCGTACG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCTTTGACCACTGAATTCTGTTT
TTGACCATTCATTATAAATAGTGGTTTTCTGAATCCTGGGATTATAAGTA
TGTGCCACAGAACTTAGCTTTAAACTGTCTCGTCACTTACAAAATGGACT
TTAGATTACATTTTGGTCCTGGGATAGCTGTGAGACTAATGGTTTCAAAC
TGAAGTGTCAGCTTAGAATATTTCCCCTACACTACTTAAGACAGATTTGG
GTCAGAGCTTAACAATCTCCACATTAGTGATTTTTTTGAATGGGATGACT
CATTGTTAGAGGCATGTCCTTTGTACAGCAGGGTGTGTGGCACATCTGAG
CTGGCAGTTATCAATAGCCTTCTTACATCTTTGAGACAATCAAAAAATGG
CTCCAGGGATATATTAAAAGATGTCTTTCATTAAATGAATAGATTAAACA
ACCTGTTACACCCTGAAAATAGGATTTATTTAGCAATAAAAACAAATGAG
CTATCAAGCTAGGAAAAGACTGAGAGTGAAAAGATCAATTTGAAAAGCTC
TTCTAACTATATGACTCCAATTATATGGTGTTCTAGAAAAGCCTATTTCT
GGAAGATAGTAAGAAGGCCGGTAGCTGCTGGGGGTTGGGAGAGGGAGAGA
TGAATGCACAGAGCACAGAGGATTTTAGGGCACTGAAATTAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_o21.g1 MSMg01no267_o21.g1 CHROMAT_FILE:
MSMg01no267_o21.g1 PHD_FILE: MSMg01no267_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:06 2005
         (670 letters)



>mm_chr15_64083769_64084838
          Length = 1070

 Score = 1265 bits (654), Expect = 0.0
 Identities = 666/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctttgaccactgaattctgtttttgaccattcattataaatagtggttttctgaatc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtctttgaccactgaattctgtctttgaccattcattataaatagtggttttctgaatc 260

                                                                       
Query: 61  ctgggattataagtatgtgccacagaacttagctttaaactgtctcgtcacttacaaaat 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ctgggattataagtatgtgccacagaacttagctttaaactgtctcttcacttacaaaat 320

                                                                       
Query: 121 ggactttagattacattttggtcctgggatagctgtgagactaatggtttcaaactgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactttagattacattttggtcctgggatagctgtgagactaatggtttcaaactgaag 380

                                                                       
Query: 181 tgtcagcttagaatatttcccctacactacttaagacagatttgggtcagagcttaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcagcttagaatatttcccctacactacttaagacagatttgggtcagagcttaacaa 440

                                                                       
Query: 241 tctccacattagtgatttttttgaatgggatgactcattgttagaggcatgtcctttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctccacattagtgatttttttgaatgggatgactcattgttagaggcatgtcctttgta 500

                                                                       
Query: 301 cagcagggtgtgtggcacatctgagctggcagttatcaatagccttcttacatctttgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcagggtgtgtggcacatctgagctggcagttatcaatagccttcttacatctttgag 560

                                                                       
Query: 361 acaatcaaaaaatggctccagggatatattaaaagatgtctttcattaaatgaatagatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaatcaaaaaatggctccagggatatattaaaagatgtctttcattaaatgaatagatt 620

                                                                       
Query: 421 aaacaacctgttacaccctgaaaataggatttatttagcaataaaaacaaatgagctatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaacctgttacaccctgaaaataggatttatttagcaataaaaacaaatgagctatc 680

                                                                       
Query: 481 aagctaggaaaagactgagagtgaaaagatcaatttgaaaagctcttctaactatatgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagctaggaaaagactgagagtgaaaagatcaatttgaaaagctcttctaactatatgac 740

                                                                       
Query: 541 tccaattatatggtgttctagaaaagcctatttctggaagatagtaagaaggccggtagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccaattatatggtgttctagaaaagcctatttctggaagatagtaagaaggccggtagc 800

                                                                       
Query: 601 tgctgggggttgggagagggagagatgaatgcacagagcacagaggattttagggcactg 660
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 801 tgctgggggttgggagagggagagatgaatgcacagagcacagaggactttagggtactg 860

                     
Query: 661 aaattaatac 670
           ||||||||||
Sbjct: 861 aaattaatac 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)