BAC Information

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BAC

Clone NameMSMg01-268K10
Chromosome15 (Build37)
Map Location 56,675,920 - 56,676,228
singlet/doubletsinglet
Overlap genenone
Upstream geneSntb1, LOC665348, LOC100039908, Hba-ps3, Has2, EG594843, LOC435442
Downstream geneLOC100040067, LOC100039984, BC026439, Zhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268K10.T7 (MSMg01no268_k10.b1)MSMg01-268K10.TJ (MSMg01no268_k10.g1)
ACCAG409004AG409005
length728717
length of high quality
(start - end)
312 (45 - 356)55 (240 - 294)
definitionCHROMAT_FILE: MSMg01no268_k10.b1 PHD_FILE: MSMg01no268_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:58 2005CHROMAT_FILE: MSMg01no268_k10.g1 PHD_FILE: MSMg01no268_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGACCTACCCTCCTCTTTGACAGAGATAGCAAGTGCCTCATCTC
ATAATCAGAAAAACATGGTCACTAGAGCAGGGATATCAGCAAACAACTTT
GTCTGCAGGCTCCTCTGGACACAGCATGCATAAGAAACCCAAGTGTCACT
TCTTATTGTTCTATTTGAGATGTCAAAGACATGTCAGATTGCATTATTTA
TTTCTAAGTAGAGAAATTTGACTCTATCTTCTACGTATTCCTCTGTGAGA
ACCAGTTTAATCTCTGAATAAACAAGAAACTTATATGAGGAAATTACTTT
CAAGTGATTAATTGNTTGTCTCCACCGCCCCCTCTCTTTCTACTGGCTTC
CCTCAAGTCTACAGGCACAGGCTTAGAAGAAAGAGAGGAAGTGTTTTAAG
CAAAATTCCTGTGGTCATTTTTTTCCATTTTCAAGTAATGGGTCACTTAG
TATGCCTGGAGATTTGCCAAGTAGTTTACTTTTCTGCATCATTTAAGCTA
ATTCTTTGTAAGACATATTTCCTGCCCAATTGGGAAAATAGACAAAGAAT
GAAGAAGGGAAAAAAAAAACCAGACCAAATGGAATAAAACCATGGCAACT
GATTGAAAGCCATTATGTAGAATACAGTTAAGGAATAGGTATAATAAAAG
AGAATGATAGAATTATGTATAGTTCTTT
CCTGGCGGCCGCCTGGTTGCAAAAAAAAGGNGAANNAGAGAAGGTTCCCC
GAAATTCTTTCCAAGGGGAAAAGAGGNGACTGGAAAGGAAANANAANATT
TTGACCCCGAGACAGAGAGAGNAAAAGAAAAAAATTACTTTTGTGNTGAN
TAGTTTTATGTCAATTTGACACAGNCTAGAGGAAAGTAGGAAACCTCAAT
GGAGAAAATGTCTACATAAGATCCAGTTGTGTTTTTGTTACTAGTGACTG
ATTGGGCAGAACCCAGCCCATGGGGTGGATCAATCCCTGGAAGGGNGTTT
TTCTGTTTTGGAAANACAGGAACAAAAAGGGGAGNAGAGTTGGGGTGGAA
CCCCAANNCCAGANGCCCGTTTTTTTTTTTTTTTTGGTGGGGNNGNNNGN
NAAAAAAAAAAAATTGTTAAAGTTTTTTGGNNNTTNGGGNTNTTTNNTTG
TTTTGTTGTTNNTTGTGNGTTGTTTGTGGGTGGTGGTTNNTGTTNGGTGG
GGTGTGTGTGGGTNGGGTGTTTTTGGGTGGGGGGTTGTGGTGGTTGTTTT
TGTGTGGGGGGTGGGGGGGGGTTGGGGGGGTTTGTGTGTGTGGGGTGGTG
GGGTTGGGTTTGGTGTGGTGGGGGGGTTTTTTTTTTTTTTTTTTNTNNGG
GTGGGGGGGGGGGTGTGTTGTGTTGTTGGGGGGTGTGGTGTTGTGTNGGG
GTTGGTGGTTTTTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_k10.b1 MSMg01no268_k10.b1 CHROMAT_FILE:
MSMg01no268_k10.b1 PHD_FILE: MSMg01no268_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:58 2005
         (312 letters)



>mm_chr15_56675717_56676428
          Length = 712

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaggacctaccctcctctttgacagagatagcaagtgcctcatctcataatca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaggacctaccctcctctttgacagagatagcaagtgcctcatctcataatca 263

                                                                       
Query: 64  gaaaaacatggtcactagagcagggatatcagcaaacaactttgtctgcaggctcctctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaaaacatggtcactagagcagggatatcagcaaacaactttgtctgcaggctcctctg 323

                                                                       
Query: 124 gacacagcatgcataagaaacccaagtgtcacttcttattgttctatttgagatgtcaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gacacagcatgcataagaaacccaagtgtcacttcttattgttctatttgagatgtcaaa 383

                                                                       
Query: 184 gacatgtcagattgcattatttatttctaagtagagaaatttgactctatcttctacgta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacatgtcagattgcattatttatttctaagtagagaaatttgactctatcttctacgta 443

                                                                       
Query: 244 ttcctctgtgagaaccagtttaatctctgaataaacaagaaacttatatgaggaaattac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcctctgtgagaaccagtttaatctctgaataaacaagaaacttatatgaggaaattac 503

                    
Query: 304 tttcaagtg 312
           |||||||||
Sbjct: 504 tttcaagtg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)