Query= MSMg01no268_n09.b1 MSMg01no268_n09.b1 CHROMAT_FILE:
MSMg01no268_n09.b1 PHD_FILE: MSMg01no268_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:11 2005
(313 letters)
>mm_chr15_46830961_46831673
Length = 713
Score = 569 bits (294), Expect = e-166
Identities = 300/302 (99%), Gaps = 1/302 (0%)
Strand = Plus / Plus
Query: 5 gaattctactccaagatcagtggtaataatttggcttactaaaaaccagttcagacatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctactccaagatcagtggtaataatttggcttactaaaaaccagttcagacatat 264
Query: 65 cagtccataatcttgatttcaagttgtgctcttggacatctatgaaacgtagcagggcat 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 cagtccataatcttgatttcaagttgtgctcttggacatctatgaaaagtagcagggcat 324
Query: 125 tataatgtgggacttaataacttttttcattattaaaagtatttatagtttcagcctgat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tataatgtgggacttaataacttttttcattattaaaagtatttatagtttcagcctgat 384
Query: 185 gaaggtggtcattgaatctctggttgcaaacaagtatctttcctttttttaaaaaaa-tt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 gaaggtggtcattgaatctctggttgcaaacaagtatctttcctttttttaaaaaaaatt 444
Query: 244 aggtattttcttcatttacatttccaatgctatcccaaaagtcccccataccctcccccc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtattttcttcatttacatttccaatgctatcccaaaagtcccccataccctcccccc 504
Query: 304 cc 305
||
Sbjct: 505 cc 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_n09.g1 MSMg01no268_n09.g1 CHROMAT_FILE:
MSMg01no268_n09.g1 PHD_FILE: MSMg01no268_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:11 2005
(286 letters)
>mm_chr15_46896131_46896815
Length = 685
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%), Gaps = 1/286 (0%)
Strand = Plus / Minus
Query: 1 atgactgattagcagttttgtgggtggggagtaagtatggcagagcaagaattatgcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atgactgattagcagttttgtgggtggggagtaagtatggcagagcaagaattatgcact 426
Query: 61 atatgaagaagaatgaagttataaagggtgtactgaatgagataatagcactaagtttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atatgaagaagaatgaagttataaagggtgtactgaatgagataatagcactaagtttat 366
Query: 121 gtgagtcagaaaattagtggaagtgaccttttgtaaggatttcctggaatccacacattt 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 365 gtgagtcagaaaattagtggaagtgaccttttgtaaggatttcc-ggaatccacacatct 307
Query: 181 tgtttatgtaatatcaatattgatggatattttcagtgtgtgagataagagattaggagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgtttatgtaatatcaatattgatggatattttcagtgtgtgagataagagattaggagt 247
Query: 241 gagaaagtagtgaataatgtaagaggcattgcaacagaagtctctt 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gagaaagtagtgaataatgtaagaggcattgcaacagaagtctctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space: 187252
Effective search space used: 187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
